Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq89547 147 4e-30 >seq89547 Length=5293 Score = 147 bits (162), Expect = 4e-30 Identities = 380/570 (67%), Gaps = 13/570 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || || |||||||| || || ||||||| Sbjct 3392 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATCTT 3333 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | || | | |||| | || ||| || |||||| |||| || ||| | || Sbjct 3332 TCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCACGCAC 3273 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || |||||||||||||| || || || || |||||| || || || ||| Sbjct 3272 GTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAAGGTTC 3213 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| || ||| || |||| | ||| |||||||| |||||||| |||||||| Sbjct 3212 ATGACGGAGGTCCAGGTCGCCGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCCATCGA 3154 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| || |||| | |||||| || ||||| | |||| || ||| Sbjct 3153 GAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGA 3094 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 | | || || ||| ||||||||| | ||| || || | ||| || ||| Sbjct 3093 AAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTG 3034 Query 25836 GGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | || |||||| || || | ||| || |||| ||| | | | || |||| Sbjct 3033 GGCGTTAAATTGGATCGACGGCTCGGAG----ACTTTTGCGGAGAGATTAATCGCGTTTG 2978 Query 25895 CTGCTGTGGAGGGCATCT--TTTTCAGCG-GTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 || |||||||| || | || |||| | ||| ||||| || || || |||||||| Sbjct 2977 CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTT--TTTGC-GCGATATTTTGGCTCAAAA 2921 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || ||| ||||| || || || || || ||| | ||| | || ||||||| Sbjct 2920 AGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGTTGATCTCGCGAGATGAGGGTC 2861 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||| | ||||| || |||||| | |||| Sbjct 2860 TCCACTGCGATTTCGCGTGCCTGTTGTACA 2831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926075820766720