Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq195423 609 2e-169 seq9524 123 3e-23 >seq195423 Length=63734 Score = 609 bits (674), Expect = 2e-169 Identities = 704/946 (74%), Gaps = 2/946 (0%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| || || ||| |||| || | || |||| Sbjct 1575 GGTTGGTTTGGTGTTTTGATGATCCCTACT-TTATTGACCGCAACTTCTGTATTTATTAT 1517 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||||||||| || || || ||||| || || ||||| ||| ||||||| Sbjct 1516 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATC 1457 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || || |||||||| || |||| | ||| || || || Sbjct 1456 TCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGG 1397 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| || |||||||| || || ||||||| ||| | ||||| || || Sbjct 1396 TTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 1337 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 1336 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 1277 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || |||||||||||||| ||||||||| || ||||| Sbjct 1276 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 1217 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| || || ||||||| ||| | |||| || | |||||||| || ||||| Sbjct 1216 TGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 1157 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| ||||| ||||| | ||| |||| |||||||||||||| Sbjct 1156 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCA 1097 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| ||||||||| | || || |||||||| |||||||| || || Sbjct 1096 CAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 1037 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || || ||| || | | || ||||| |||| Sbjct 1036 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 977 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || || |||| ||||||||||| || |||||||| || || || || Sbjct 976 TGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 917 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||| || || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 916 TGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 857 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||||| ||||| |||||||| || || |||||||| || || | || | Sbjct 856 TTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 797 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||| | ||||| ||||| |||||||| || | | || | || Sbjct 796 TAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 737 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || |||||||| || | |||| || || || ||||||||||| Sbjct 736 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGT 677 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || |||||||| || ||||| || ||| Sbjct 676 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 554 bits (614), Expect = 5e-153 Identities = 724/999 (72%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| ||||||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| | || | || || ||| | || ||||| || ||| Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTG-AGGGTGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| || | | ||| ||| || ||| | Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTT 36130 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGG 36190 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 |||||| | || |||||||| |||||| || | || || || ||| ||||||| Sbjct 36191 TCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGT 36250 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || || ||||| || |||| |||| || || |||||||| || ||||| || || | Sbjct 36251 TGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 36310 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | || | | |||||||| ||||| || || || |||| || |||||||||||||| Sbjct 36311 CTCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGT 36370 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || |||||||| || |||||| |||||||||||||||| ||||| || Sbjct 36371 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 36430 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || |||||||| || || ||| | || || |||| || |||||||||||||| | || Sbjct 36431 TGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAA 36490 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 ||||| ||||||||||||||||| ||| || |||| | || || |||| || || || Sbjct 36491 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCA 36550 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | || |||||||| || | | | ||||||| || |||||||| ||| || Sbjct 36551 TGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGC 36610 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | || |||| ||||| |||||||||||||| || |||||||| || ||||| Sbjct 36611 TTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTC 36670 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 36671 TCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 36730 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | || ||||| | | || || || || || || || Sbjct 36731 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACG 36790 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 |||||| || || || || || || ||| | || | |||||||||||||||||||| || Sbjct 36791 TGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 36850 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||| ||| | ||||| ||| ||||||| |||||||| | || || Sbjct 36851 CTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 36910 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 36911 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 36949 >seq9524 Length=8324 Score = 123 bits (136), Expect = 3e-23 Identities = 219/319 (69%), Gaps = 18/319 (6%) Strand=Plus/Minus Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCC 8787 ||| |||| ||||||| ||| |||| |||||||||||||||| ||| || |||| | Sbjct 901 TCCAGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCA 842 Query 8788 TTCCACATGCT-------TGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAAT 8840 ||||||||| | || | ||||||| || ||||| |||| | || Sbjct 841 TTCCACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGG---------TTCC-CTAT 792 Query 8841 GCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAA 8900 ||| |||| | || || ||| || | || || ||||| |||| || |||| || Sbjct 791 GCACGGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAA 732 Query 8901 CTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTA 8960 | | |||| || |||| ||| |||||||||||| | ||||| | ||||||| || Sbjct 731 GGAAAGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTA 672 Query 8961 CTTTGGTCGCTTGAT-CTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCT 9019 ||||| ||||| ||||| |||||| ||| ||||||| || ||||||| Sbjct 671 TTTTGGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCT 612 Query 9020 TCCTCGCTGCGTGGCCTGT 9038 |||| | ||| |||||||| Sbjct 611 TCCTAGATGCTTGGCCTGT 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514940321472000