Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq68514 91.5 1e-13 seq72069 86.0 5e-12 >seq68514 Length=8688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| || ||||| |||||||| ||||| | || || || || || ||| |||| ||| Sbjct 7982 TGTGAAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGA 8041 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || || | | | | ||||| || ||| ||||| |||||| | || Sbjct 8042 GAGCTCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCC 8101 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || ||| | || |||||||| || || ||| | ||||| ||| ||||||| Sbjct 8102 GGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGA 8161 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| ||| |||| Sbjct 8162 TTACAACATTCAAAAAGAATCCACTTTGCA 8191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 821 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 880 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| || || | || ||||||| Sbjct 881 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 940 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || |||||| Sbjct 941 CAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAAC 1000 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 1001 ATCCAGAAAGAGTCAACTCTTCAC 1024 >seq72069 Length=2032 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || ||||||||||||||| | ||| | || ||| Sbjct 214 GATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACGCTTGCAGAT 273 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || || || || ||| |||| Sbjct 274 TATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424168330106952