Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq195423 737 0.0 seq98625 131 2e-25 seq29272 118 1e-21 seq9524 116 4e-21 seq29277 102 9e-17 >seq195423 Length=63734 Score = 737 bits (816), Expect = 0.0 Identities = 760/989 (77%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || ||||| || ||||||||||| |||||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| |||| ||| | | | || || | ||| || || || |||||| ||| ||||| Sbjct 1557 ATGAT-CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 1500 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || || || ||||| ||||||||||| || |||| || || | |||||||||| Sbjct 1499 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1440 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| | Sbjct 1439 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1380 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| ||| | || |||||| | ||||| || ||||||| | || ||| Sbjct 1379 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1320 Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | | |||||| | |||| | | ||||||||||||||||||||||||| || || Sbjct 1319 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1260 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| ||||||||||||||| || ||||| || |||||||| || ||||||| || Sbjct 1259 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || ||| || |||| || |||||||||| ||| ||||||| |||||||| || | Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 |||||||||| ||||| | |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | ||||| ||| | |||||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| |||| |||||| || | | |||||||| ||||| || || || | Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 |||||| ||||||||||| ||||| || || || ||||| ||||| ||||| || || | Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 | || |||| |||||||| ||| |||||||| || || || | || |||||||| | Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 ||||||||||||| || || |||||||||||||| | || | ||||| ||||| |||| Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 || | ||||||||||| |||||||| ||| | ||||||||||| ||| || || || | Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 ||||||| || || | || |||||| ||||| |||||||| ||||| || || |||| Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCT 161862 |||| ||||||||||| ||||| |||||| Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 527 bits (584), Expect = 7e-145 Identities = 729/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCT 162295 || || |||||||| || ||| | || ||||||||| | || || ||||| ||| | Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 36130 Query 162296 TACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGG 162355 || || |||||||| ||||| || | | | | |||||| | || | |||||||| Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGG 36190 Query 162356 TCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGT 162415 |||||| | ||||| || || | |||||||| ||| | || || || ||||||||||| Sbjct 36191 TCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGT 36250 Query 162416 GGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 162475 || || ||||| || || | ||| |||||||||||| | || || |||||||| || || Sbjct 36251 TGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 36310 Query 162476 A-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCG 162534 || || | | || ||||| ||||| || || ||||| | ||| |||||||| || | Sbjct 36311 CTCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTG 36369 Query 162535 TTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCG 162594 || ||| || || || ||||| | || || || |||||||| || || || | Sbjct 36370 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 36429 Query 162595 GGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAA 162654 | || || || || || |||||| | || || |||||||||| ||||| ||||| | | Sbjct 36430 GTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGA 36489 Query 162655 ATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTC 162714 | || ||||| |||||||| || || ||| | | || | ||| |||| | ||| |||| Sbjct 36490 ACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTC 36549 Query 162715 ATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAG 162774 |||| | || || |||||||| | | |||||||| || |||||||| || | Sbjct 36550 ATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTG 36609 Query 162775 CATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGT 162834 | ||| || | || || | |||||||| ||||||||||| || || |||||||| |||| Sbjct 36610 CTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGT 36669 Query 162835 CACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTG 162894 | || || || || |||||||| || || |||||||| |||||||||||| | |||| Sbjct 36670 CTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 36729 Query 162895 TTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTC 162954 | || || | ||| | |||| ||| || | || | | || || || || || || | Sbjct 36730 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTAC 36789 Query 162955 GTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGT 163014 ||||||| ||||| || || || ||| | ||||| || ||||| ||||| |||||||| | Sbjct 36790 GTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 36849 Query 163015 TCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACC 163074 |||| ||||| || |||||| | || || || |||| || ||| | || | || | Sbjct 36850 TCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATC 36909 Query 163075 AACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 | |||||||| ||| || | |||||||| ||||| | || | || |||||||| Sbjct 36910 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 >seq98625 Length=4366 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 || |||||||||||||| || |||||||||||||| || ||||| || || || ||| Sbjct 1740 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 1681 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 || || || ||||| ||| ||||||| || || | || ||||| | || ||||| Sbjct 1680 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 1621 Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511 || |||||||| || || | ||||| || |||||| | |||||||| |||| Sbjct 1620 GATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 1561 Query 158512 TATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 || || || ||||| |||||| || || |||||||||| || || Sbjct 1560 TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCT 1514 >seq29272 Length=1881 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 158344 ATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGCGCT 158403 || ||||| || ||||| ||||| || | || || ||||| ||| | || || ||| Sbjct 1552 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 1493 Query 158404 TGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTC 158463 || || || ||| | || ||| | || ||||| ||||| ||||| || || ||| Sbjct 1492 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 1433 Query 158464 CTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACAAGT 158523 ||||| ||||| ||||| | ||||| |||| ||||||| | ||||||| |||||| Sbjct 1432 CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGT 1373 Query 158524 GATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 ||| | || |||||| ||||||||||||| || Sbjct 1372 GATGTTACTATAGAGACTCACAAGGAAGAGGAGCT 1338 >seq9524 Length=8324 Score = 116 bits (128), Expect = 4e-21 Identities = 214/315 (68%), Gaps = 18/315 (6%) Strand=Plus/Minus Query 161360 GTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCC 161419 |||| ||||||| |||| |||| ||||| || ||||||| |||||| |||| | |||| Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838 Query 161420 ATATGCTC-------GGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 | ||| | ||| |||| |||| |||||||||||| || |||||| Sbjct 837 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCAC 788 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 |||| |||| |||||| || | || |||||||| ||||| || || | || | Sbjct 787 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 728 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 | |||| || |||| ||| || || || ||| | || || |||| || | || || Sbjct 727 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 668 Query 161593 GGTCGTCTGATT-TTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCT 161651 || |||| |||| ||| ||| ||| ||| || | || | || |||||||| Sbjct 667 GGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCT 608 Query 161652 TGCTGCTTGGCCTGT 161666 | |||||||||||| Sbjct 607 AGATGCTTGGCCTGT 593 >seq29277 Length=523 Score = 102 bits (112), Expect = 9e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 || || ||||| |||||||| || || || | || ||| || || ||| | || || Sbjct 302 TATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGT 243 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 |||| || | ||||| || ||| | ||||| || | || ||||| || | Sbjct 242 TCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCAGATGGAAGC 183 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || || || ||||| ||||| ||| | |||| |||| ||||||||| ||||||||||| Sbjct 182 TTTCTTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACA 123 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGAT 158566 |||||| | ||||||| ||||||| || ||| ||| || || Sbjct 122 AGTGATGTTACTGTTGAGACACACAAGGATGAAGAAATGTCTTAAT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546114310822080