Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq195423 551 7e-152 seq29277 122 1e-22 seq29272 105 8e-18 seq83019 95.1 2e-14 >seq195423 Length=63734 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 36964 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 36905 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||| || || || || || || ||||||||||| ||| Sbjct 36904 TGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGAAAGTC 36845 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||||||||| ||| Sbjct 36844 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCACGTAGG 36785 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || || || | | || | | ||| |||| | ||| | || || ||||| Sbjct 36784 TTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 36725 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||||||||| Sbjct 36724 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAGACCAA 36665 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || ||||| ||||| || ||||| |||| || | | || || | Sbjct 36664 AAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAGCACGG 36605 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || |||||||| ||||||||||||| | | ||| || || || || | || || || Sbjct 36604 AATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCGCCATGAATG 36545 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| || ||||| | Sbjct 36544 GCACATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGTTCAAT 36485 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | || || | ||||| ||||||||| || |||||||| Sbjct 36484 GTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATCGCCGCTACACCAAAA 36425 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 36424 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 36365 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || ||||||| || || ||||| || || || | | || | | ||| Sbjct 36364 ACAGCAATTGGAGCAGAGAATGCTATTGCATTATAAGGTCGCAATTGAACAGAGCGAGCA 36305 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || | || |||||||| ||||| |||||| Sbjct 36304 AGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGTAGAGCAACAAAA 36245 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 36244 GTCCAAAGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 36185 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || || || || | ||| Sbjct 36184 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTTAAGAAG 36125 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | || ||||||||||| ||||| |||| || Sbjct 36124 TT-GCAGCCTTCCAAATAGGAACTGGCTAATCCATGGGTATACCATGAAGTTACAAAGGT 36066 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 ||||| || | ||| ||||| | |||| ||| ||| ||||| || | ||| ||||| Sbjct 36065 TGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGGCCAGA 36006 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 36005 CCAACCTACAAAAACGAATCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 35952 Score = 533 bits (590), Expect = 2e-146 Identities = 695/964 (72%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| || || | || || |||||||| || | |||||||| |||| ||||| | Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || | |||||| ||||| ||||||| ||| | || || Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||||||||| ||||| || | || ||||| Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || |||||||||||||| || || || ||||| ||||| |||||||| || || Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| || ||||||| |||| || || || Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||||||||||| || || || |||| Sbjct 991 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 1049 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| ||||| | ||||||||| |||||||| || ||||| || || || |||| Sbjct 1050 ATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 1109 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | |||| | ||||| || || || || || | ||||||| |||| || || | Sbjct 1110 ATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTC 1169 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||| | ||||||| |||||| || || | ||| || ||||||||||| || |||| Sbjct 1170 CTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATG 1229 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| || ||||| ||||||||| | | |||||||||||| ||||| | Sbjct 1230 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1289 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | |||||| | || | || | ||||||| || || || | Sbjct 1290 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1349 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||| ||||||| ||||| |||||||| || || || || || | ||| || || || Sbjct 1350 ACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGC--TGC 1407 Query 103950 AGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || || |||| || |||||||| || || ||||| || || | || || |||| || Sbjct 1408 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1467 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 ||||||||||| ||||| ||||| || ||||| || || | ||| || | || || | Sbjct 1468 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1527 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 ||| ||||| | ||| | ||| |||||||||| ||||| |||||||||| || || | Sbjct 1528 AGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC 1586 Query 104127 GGTT 104130 |||| Sbjct 1587 GGTT 1590 >seq29277 Length=523 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 102821 GTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAG 102880 || || || || || || || |||||| ||||||| |||| |||||| || || |||||| Sbjct 124 GTAGGATAAGCAACACAAGTGAGAACATAACCTGCATCTATTTGATCATCCTCAAGAAAG 183 Query 102881 GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCA 102940 | |||| || || ||| |||| || ||| || |||||||||||||| || | | Sbjct 184 CTTCCATCTGACTGGTCAACACTACCTGAGACAACTTTCCCAGCACAAGTAGAGCAAGAA 243 Query 102941 CCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATAT 103000 ||||| | || ||||| || ||||||| || || || ||||| || || ||||||||| Sbjct 244 CCAGCCCTGCATGAATATGGGAGATCAATTCCAGCATCTTCAGCTGCATCAAGAATATAT 303 Query 103001 TGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGTCTTGAG 103047 ||||| ||| || || || || || |||| ||| |||| Sbjct 304 GTGTCATCAGGACACTCAATTTCTTGCTCTCCCTCGGGTGTAATGAG 350 >seq29272 Length=1881 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 102821 GTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAG 102880 ||||| || || | || || |||||||||||| || | | |||||| |||||||||||| Sbjct 1377 GTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGATCATCATCCAGAAAG 1436 Query 102881 GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCA 102940 ||| || || || || || || || ||| || |||| ||| | ||| || || Sbjct 1437 CTTTGCTCCGACTGGTCAACGGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCC 1496 Query 102941 CCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATAT 103000 ||||| | || || || || ||||||| || ||||| |||||||| || |||||| | Sbjct 1497 CCAGCCCTGCATGAGTACGGAAGATCAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAAC 1556 Query 103001 TGATCATCCTCACAGGTGATATC 103023 ||||| |||| |||| || Sbjct 1557 GAGTCATCAGGACAGTTGATTTC 1579 >seq83019 Length=2865 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 |||||| || || ||||| ||||| || || ||||||||| || | || | ||||| Sbjct 496 ATCCGATGTAGGATATGCAACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATC 555 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 || || ||| |||| ||| || || | || || | |||| |||||||||||||| Sbjct 556 AAGGAATGATCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAGA 615 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 || |||||||| ||||| || || || || || | || | || || |||| ||||| Sbjct 616 GCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCGGCAGAGTCTAT 675 Query 102994 AATATATTGATCATC 103008 || || |||||| Sbjct 676 GATGTAAGCATCATC 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631625032607040