Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 518 4e-142
seq48332 86.0 7e-12
>seq195423
Length=63734
Score = 518 bits (574), Expect = 4e-142
Identities = 707/984 (72%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108
||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | |||
Sbjct 635 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 694
Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168
|| | || | || |||| |||| || | | || | | |||||| || |||
Sbjct 695 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 754
Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228
||||| || ||||||||||| |||||||| ||||| |||| ||||| | || || |||
Sbjct 755 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 814
Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288
|| | || ||| ||||| || | || |||||||| || | | | || ||||||||
Sbjct 815 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 874
Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348
|||||| |||||||| | || ||||| |||||||| || ||||| || || || |||
Sbjct 875 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 934
Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408
||||| ||||| ||||| | ||||| || || || | ||||| ||||| |||
Sbjct 935 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 994
Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468
|| | | ||| || || | ||||||||||| || ||||| || || ||||| |
Sbjct 995 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1054
Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528
|| ||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| ||
Sbjct 1055 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1114
Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588
| ||| || ||||||||||| ||||| || || |||||||||||||| || || |||
Sbjct 1115 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1174
Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648
|| | |||||| | ||||| ||||| || || | || || |||||||| ||||||
Sbjct 1175 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACA 1234
Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708
|||||||||||||| || | | | | |||||||||| | ||||||||
Sbjct 1235 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1294
Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768
| | ||||| | |||||| | || | | || ||||||||| ||||| || ||||||
Sbjct 1295 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 1354
Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828
|||||||| | ||| |||||||| || ||||| || || | || ||||| || |
Sbjct 1355 TCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 1414
Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888
|||| || |||||||| || || ||||| ||||| | | ||| || | || |||||
Sbjct 1415 GGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1474
Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947
| || ||||| ||||| || ||||| || ||||| || || | || || ||| | |
Sbjct 1475 CGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 1533
Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007
||| || | ||| || ||||| | ||||||||||||||||| |||| | ||| |
Sbjct 1534 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTC 1593
Query 125008 TGTTGATGTTACCCACTCACAGAA 125031
|| |||| ||| | ||||||
Sbjct 1594 AGTGCTAGTTATCCAGTTACAGAA 1617
Score = 376 bits (416), Expect = 3e-99
Identities = 705/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Minus
Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925
|||||| ||||| || | |||| || || || ||||||| || || ||||| || ||
Sbjct 36968 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 36909
Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985
|| || | |||||| || | || || || || | |||||| || || || |||||
Sbjct 36908 ATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGAA 36849
Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045
|||||| || || || ||||| ||||| | || || || || || ||||| || || |
Sbjct 36848 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCACG 36789
Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105
||||| || ||||| || || | || | || |||| | ||| | || || ||
Sbjct 36788 TAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 36729
Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165
|| ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || ||
Sbjct 36728 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAGA 36669
Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225
||| || | ||| || || | ||| ||| |||||||| | || || || | || ||
Sbjct 36668 CCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAGC 36609
Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285
| ||| || | ||| | || ||| || ||||| | || ||
Sbjct 36608 ACGGAATGT----GTTTGCA-----CCATCACCAT------------CTTCAAATAAAGT 36570
Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345
|| | || || || ||||||||||||||||| | || | || | || || |||||
Sbjct 36569 ATTTTCTACGGTAGCGCCATGAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAAC 36510
Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405
|||||||| ||||| || |||||||| || || || ||||| | || | ||| |
Sbjct 36509 TCCCATCATATGAAAGGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAA 36450
Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465
||||| || || || ||||| || || || |||||||||| ||||||||||||
Sbjct 36449 TCGAAATATCGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGG 36390
Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525
||| ||||| || | | || || || || |||||||||||| | ||| || ||
Sbjct 36389 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATA 36330
Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585
||||| | ||| | || | |||||||| | | |||||||||||| |||||
Sbjct 36329 AGGTCGCAATTGAACAGAGCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCC 36270
Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645
|| | || |||| || ||||| |||| ||||| || | ||| |||| ||| ||
Sbjct 36269 GAAAGCACCGTGTAGAGCAACAAAAGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAA 36210
Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705
||||||||||||||| ||||| || |||| | | ||| | | | | ||||
Sbjct 36209 ATCTCCTTGTGCTTCAGGACCCCATAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 36150
Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765
|| || ||||| || ||||||||||| || || | ||| ||| || | |||||
Sbjct 36149 AGTCGAAACTGCGGCGGTTAAGAAGTTGCAGCCTTCCAAATAGGAACTGGCTAATCCATG 36090
Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825
||||||||||| || || ||||| || ||| ||||||||| || | | | ||| ||
Sbjct 36089 GGTATACCATGAAGTTACAAAGGTTGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGC 36030
Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885
|||||| | || || || |||||||| |||| || || || || || ||| ||||||
Sbjct 36029 ACAAGGAAAGAGCAATAGGCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGTAACCA 35970
Query 123886 GTCGTCAAGAACATCAAA 123903
||| || | || ||||||
Sbjct 35969 GTCATCCATAATATCAAA 35952
>seq48332
Length=8649
Score = 86.0 bits (94), Expect = 7e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
||||||||||| || | |||||||| ||||||||||| ||||| || ||||| || ||
Sbjct 5427 ACACCAATAGGGCCCATACCAGGACCACCACCTCCATGCGGAATGCAAAATGTTTTGTGG 5368
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCT 138297
| ||| ||||| || ||||| || ||| || || || ||| ||||| ||||
Sbjct 5367 AGATTGAGATGGCAAACATCAGCTCCAATGTAACCAGGGCTTGTCAGACCGACCT 5313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577272347869760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |