Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq195423 518 4e-142 seq48332 86.0 7e-12 >seq195423 Length=63734 Score = 518 bits (574), Expect = 4e-142 Identities = 707/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 635 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 694 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || | || |||| |||| || | | || | | |||||| || ||| Sbjct 695 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 754 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| |||||||| ||||| |||| ||||| | || || ||| Sbjct 755 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 814 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | || |||||||| || | | | || |||||||| Sbjct 815 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 874 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| |||||||| || ||||| || || || ||| Sbjct 875 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 934 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| || || || | ||||| ||||| ||| Sbjct 935 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 994 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 995 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1054 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 1055 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1114 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| || ||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 1115 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1174 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | ||||| ||||| || || | || || |||||||| |||||| Sbjct 1175 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACA 1234 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | |||||||| Sbjct 1235 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1294 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| ||||| || |||||| Sbjct 1295 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 1354 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| |||||||| || ||||| || || | || ||||| || | Sbjct 1355 TCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 1414 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| || || ||||| ||||| | | ||| || | || ||||| Sbjct 1415 GGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1474 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || ||||| ||||| || ||||| || ||||| || || | || || ||| | | Sbjct 1475 CGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 1533 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | ||| || ||||| | ||||||||||||||||| |||| | ||| | Sbjct 1534 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTC 1593 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 1594 AGTGCTAGTTATCCAGTTACAGAA 1617 Score = 376 bits (416), Expect = 3e-99 Identities = 705/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 36968 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 36909 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || || || || | |||||| || || || ||||| Sbjct 36908 ATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGAA 36849 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 36848 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCACG 36789 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || ||||| || || | || | || |||| | ||| | || || || Sbjct 36788 TAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 36729 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 36728 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAGA 36669 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| ||| |||||||| | || || || | || || Sbjct 36668 CCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAGC 36609 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| | || ||| || ||||| | || || Sbjct 36608 ACGGAATGT----GTTTGCA-----CCATCACCAT------------CTTCAAATAAAGT 36570 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || || ||||||||||||||||| | || | || | || || ||||| Sbjct 36569 ATTTTCTACGGTAGCGCCATGAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAAC 36510 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || |||||||| || || || ||||| | || | ||| | Sbjct 36509 TCCCATCATATGAAAGGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAA 36450 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| |||||||||||| Sbjct 36449 TCGAAATATCGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGG 36390 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || |||||||||||| | ||| || || Sbjct 36389 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATA 36330 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| | || | |||||||| | | |||||||||||| ||||| Sbjct 36329 AGGTCGCAATTGAACAGAGCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCC 36270 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || |||| || ||||| |||| ||||| || | ||| |||| ||| || Sbjct 36269 GAAAGCACCGTGTAGAGCAACAAAAGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAA 36210 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 36209 ATCTCCTTGTGCTTCAGGACCCCATAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 36150 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||||||||| || || | ||| ||| || | ||||| Sbjct 36149 AGTCGAAACTGCGGCGGTTAAGAAGTTGCAGCCTTCCAAATAGGAACTGGCTAATCCATG 36090 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 36089 GGTATACCATGAAGTTACAAAGGTTGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGC 36030 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || || |||||||| |||| || || || || || ||| |||||| Sbjct 36029 ACAAGGAAAGAGCAATAGGCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGTAACCA 35970 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 35969 GTCATCCATAATATCAAA 35952 >seq48332 Length=8649 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||||| ||||||||||| ||||| || ||||| || || Sbjct 5427 ACACCAATAGGGCCCATACCAGGACCACCACCTCCATGCGGAATGCAAAATGTTTTGTGG 5368 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCT 138297 | ||| ||||| || ||||| || ||| || || || ||| ||||| |||| Sbjct 5367 AGATTGAGATGGCAAACATCAGCTCCAATGTAACCAGGGCTTGTCAGACCGACCT 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577272347869760