Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 580 1e-160
seq29272 125 9e-24
seq29277 98.7 1e-15
seq40716 96.9 5e-15
seq83019 93.3 6e-14
seq170570 91.5 2e-13
seq93305 91.5 2e-13
seq57145 86.0 8e-12
>seq195423
Length=63734
Score = 580 bits (642), Expect = 1e-160
Identities = 723/988 (73%), Gaps = 2/988 (0%)
Strand=Plus/Plus
Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789
|||||| || || | || || ||||| || || | ||| || || || || | |||||
Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690
Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849
|||||| || | || || ||||| || || | |||||||| || ||||| ||
Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750
Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909
||| || ||||| |||||||| || | ||||||||||| ||| | ||| | || ||
Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810
Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969
||||||||| || || || ||||| ||||| |||||||| || || ||||| || |||||
Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870
Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029
||| |||||||||||||||||| || || || || || || || || ||||| || ||
Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930
Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089
|| ||||| ||||||||||| | ||||| || || ||| |||| || || ||
Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990
Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149
| || | ||| || |||| || ||||||||| ||| || || || |||||
Sbjct 991 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1050
Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209
||| ||||| || || | ||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 1051 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1110
Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269
||||| |||| | || |||||||||||||| || ||||||||| |||| || ||| ||
Sbjct 1111 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1170
Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329
|||||||| || |||| | ||| || ||| |||| || || || ||||| ||||||||
Sbjct 1171 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGC 1230
Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389
||| ||||| ||||||||||| | ||| | |||||||||||||| ||||| ||
Sbjct 1231 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1290
Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449
| | | || | | |||||| | || | || | ||||||| || || || ||
Sbjct 1291 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1350
Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509
||| ||||| | ||||| |||||||| || ||||| || || | ||| || || ||
Sbjct 1351 CCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGA 1410
Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569
| | || | || ||||||||||| || ||||| ||||| | || || |||| ||| ||
Sbjct 1411 AGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1470
Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628
||||||||||||||||||||| || || || || || ||||| |||| ||| || ||||
Sbjct 1471 TTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1530
Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688
|||||| | || | || |||||||||| ||||| |||||||||| || | ||||
Sbjct 1531 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGT 1589
Query 27689 TGTTAGTTGATGTCACCCACTCACAGAA 27716
| | ||| || | ||| | ||||||
Sbjct 1590 TTTCAGTGCTAGTTATCCAGTTACAGAA 1617
Score = 549 bits (608), Expect = 3e-151
Identities = 737/1020 (72%), Gaps = 4/1020 (0%)
Strand=Plus/Minus
Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445
|| ||||||| || || | || || | |||||| | || |||||| || || |
Sbjct 36969 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 36910
Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505
| || || | |||||| |||| | || | ||| || | ||||||||| |||||||
Sbjct 36909 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGA 36850
Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565
| |||||| | | |||||| || ||||| || || || || || ||||||||||
Sbjct 36849 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCAC 36790
Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625
| || || || || || || | | |||| || | | ||| | ||| | || || |
Sbjct 36789 GTAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 36730
Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685
|||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| |
Sbjct 36729 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAG 36670
Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745
||||||| || || || || |||||||||||||| || || | || || | | || |
Sbjct 36669 ACCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAG 36610
Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805
| || |||||||| || ||||||||| | | ||||| || || ||| | ||||
Sbjct 36609 CACGGAATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCGCCAT 36550
Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865
|||| ||| | || || || | |||| || ||| ||||||||||||||||| |||||||
Sbjct 36549 GAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGT 36490
Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925
| | ||||| |||||||| || |||| || || | ||| | || |||||||| ||||
Sbjct 36489 TCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATCGCCGCTACAC 36430
Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985
| ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| |
Sbjct 36429 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 36370
Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044
| || |||||||| ||| |||| || || || ||||| || || || | | || |||
Sbjct 36369 CAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATAAGGTCGCAATTGAAC-AGAG 36311
Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104
|| || |||||||| ||||||||||| |||||||| ||| | || |||||||| ||||||
Sbjct 36310 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGTAGAGCA 36251
Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164
||||| | |||||| || || | ||| ||| || ||| || ||||| | ||||||
Sbjct 36250 ACAAAAGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGA 36191
Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224
||||| |||| | | |||||| | | | | |||||| ||||| || || || ||
Sbjct 36190 CCCCATAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTT 36131
Query 24225 AGAAAGTTAGCACCCT-CAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAAC 24283
| ||||| ||| ||| | | ||||||||| || | ||||||||| ||||| || ||
Sbjct 36130 AAGAAGTT-GCAGCCTTCCAAATAGGAACTGGCTAATCCATGGGTATACCATGAAGTTAC 36072
Query 24284 AAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAG 24343
||| | |||||| || | |||||| || | || | ||| ||| |||| || | ||
Sbjct 36071 AAAGGTTGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAG 36012
Query 24344 TCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403
||||||||||| ||||| || || || |||| | |||||| |||| || |||||
Sbjct 36011 GCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 35952
>seq29272
Length=1881
Score = 125 bits (138), Expect = 9e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 32614 GAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGT 32673
||| | |||||| | | ||| || || |||||||| |||||||| ||| |||||||
Sbjct 1337 GAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGT 1396
Query 32674 GAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTAC 32733
||| ||||| |||||| |||||||||||||||||| || || || ||||| ||
Sbjct 1397 GAGAACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACTGGTCAAC 1456
Query 32734 TGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTT 32793
|| ||||| |||| || || | ||| || || || || || || | || |||||
Sbjct 1457 GGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGG 1516
Query 32794 TAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847
| ||||| |||| |||| || || |||||||| || | ||||||| |||
Sbjct 1517 AAGATCAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACA 1570
>seq29277
Length=523
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 32643 TAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCAT 32702
|||||||| || ||||| |||||||||||||| ||| | ||| | || ||||||||||
Sbjct 113 TAACATCACTTGTAGGATAAGCAACACAAGTGAGAACATAACCTGCATCTATTTGATCAT 172
Query 32703 CATCCAAGAACGACT-GATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAA 32761
| | |||||| | | ||| ||||| || |||| || |||| || || ||||||
Sbjct 173 CCT-CAAGAAAGCTTCCATCTGACTGGTCAACACTACCTGAGACAACTTTCCCAGCACAA 231
Query 32762 GATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCA 32821
| || || | ||| || | || || || | ||||| ||| | || || ||||||
Sbjct 232 GTAGAGCAAGAACCAGCCCTGCATGAATATGGGAGATCAATTCCAGCATCTTCAGCTGCA 291
Query 32822 TCAAGGATGTATTGATCATCAGCACA 32847
||||| || ||| ||||||| |||
Sbjct 292 TCAAGAATATATGTGTCATCAGGACA 317
>seq40716
Length=1691
Score = 96.9 bits (106), Expect = 5e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039
|||| ||||| | ||| || || |||| ||| ||||||||||| || |||||||
Sbjct 1458 ATCAAAGCGGGTAAAACGTGGGAGTTTTCGGGGTGGAAATTATCATTGGGGCCATATAAA 1517
Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099
|| || |||||| ||| || ||||| ||| |||||| || || ||||| ||||||
Sbjct 1518 TTCGTGGGCATCCCAGAAATTGCATTGAATTTATACTGAATCTGATAAGCCTGGCACATC 1577
Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATT 47137
|| || ||||| || || || ||||| || | |||||
Sbjct 1578 TTAATCCCAGCTATTTTGGCTATAGCGTACCATTCATT 1615
>seq83019
Length=2865
Score = 93.3 bits (102), Expect = 6e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 32638 AATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTG 32697
||||| | ||| || || ||||||||||| || || |||||||| |||| || || ||
Sbjct 487 AATTACACAATCCGATGTAGGATATGCAACGCATGTAAGCACAAAACCTTTCTCCATCTG 546
Query 32698 ATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGC 32757
| |||||| | ||| || ||| |||||| || | || || || |||| || ||
Sbjct 547 CTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGC 606
Query 32758 ACAAGATGAACAGGCACCTGCACGACAAGAGTAG 32791
||||| || |||||||| || ||||| ||||||
Sbjct 607 ACAAGTAGAGCAGGCACCAGCCCGACATGAGTAG 640
>seq170570
Length=388
Score = 91.5 bits (100), Expect = 2e-13
Identities = 130/182 (71%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825
|| ||||||||| | | ||||| || ||| || | |||||||||||| | || | |
Sbjct 80 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGAATAGCACATAGTAAAACA 139
Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885
| | | || ||||| |||| |||||||||| |||||||| | |||| |||| | |
Sbjct 140 GCACGAAATACACCAGAAACT-CCATCATATGAAAGGGGTTTAATATCCAATTATAAGAC 198
Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945
|| |||| || | | ||||| || |||| | | ||||| |||| ||| |||||||
Sbjct 199 CCTTGGAAAAAAAAGATGAACCGAAATATCGTCACTACACCAAAACGAGGCTCAAAGAAT 258
Query 23946 CA 23947
||
Sbjct 259 CA 260
>seq93305
Length=279
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825
|| ||||||||| | | |||| || | |||| | ||||||| |||| | || || ||
Sbjct 74 TCACCATCTTCAAATAAAATATTTTCTATAGTAGCGCCATGAA-AGCACATAGCAGAGCA 132
Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885
| |||| || || ||||||||||||||||| |||||||| | ||||| |||| | |
Sbjct 133 GCGCCCAATACACAGGCAACTCCCATCATATGAAAGGGGTTCAAAGTCCACTTATAAGAC 192
Query 23886 CCCTGG----AGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAA 23941
| ||| | || || | ||||| || ||||| || ||| |||| ||| |||
Sbjct 193 CATTGGAAAAAAAAAAAGGATGAACCAAAATATCGC--CACTACCATAACTAGGCTCAAG 250
Query 23942 GAACCAAGATGACT 23955
||||||| | ||||
Sbjct 251 GAACCAACAAGACT 264
>seq57145
Length=2655
Score = 86.0 bits (94), Expect = 8e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 23997 ATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTC 24055
|| ||||||| || || || ||||| || ||||| | | || ||| || || |||
Sbjct 1761 ATTGGACCAGGGAATGCTATTGCATTATAAGGACGCAATTGAAC-AGAGCGAGCAGGTTT 1703
Query 24056 AAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCA 24115
||| ||||||||||| ||||||| ||| || |||||||||||||||||||| | |||
Sbjct 1702 AAATTGACGTAACATGAAACCTAGTAGTCTGAAAGCACCGTGGAGAGCAACAAAAGTCCA 1643
Query 24116 AAGCCC 24121
||| ||
Sbjct 1642 AAGACC 1637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 663510494644160
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