Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq195423 580 1e-160 seq29272 125 9e-24 seq29277 98.7 1e-15 seq40716 96.9 5e-15 seq83019 93.3 6e-14 seq170570 91.5 2e-13 seq93305 91.5 2e-13 seq57145 86.0 8e-12 >seq195423 Length=63734 Score = 580 bits (642), Expect = 1e-160 Identities = 723/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || ||||| || || | ||| || || || || | ||||| Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 |||||| || | || || ||||| || || | |||||||| || ||||| || Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || | ||||||||||| ||| | ||| | || || Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||||||| || || || ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| |||||||||||||||||| || || || || || || || || ||||| || || Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||||||||| | ||||| || || ||| |||| || || || Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 991 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1050 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| || || | ||||||||| |||||||||||||| ||||| || |||||||| Sbjct 1051 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1110 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| |||| | || |||||||||||||| || ||||||||| |||| || ||| || Sbjct 1111 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1170 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||||| || |||| | ||| || ||| |||| || || || ||||| |||||||| Sbjct 1171 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGC 1230 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| ||||| || Sbjct 1231 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1290 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | ||||||| || || || || Sbjct 1291 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1350 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||| ||||| | ||||| |||||||| || ||||| || || | ||| || || || Sbjct 1351 CCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGA 1410 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || ||||||||||| || ||||| ||||| | || || |||| ||| || Sbjct 1411 AGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1470 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 ||||||||||||||||||||| || || || || || ||||| |||| ||| || |||| Sbjct 1471 TTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1530 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| |||||||||| || | |||| Sbjct 1531 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGT 1589 Query 27689 TGTTAGTTGATGTCACCCACTCACAGAA 27716 | | ||| || | ||| | |||||| Sbjct 1590 TTTCAGTGCTAGTTATCCAGTTACAGAA 1617 Score = 549 bits (608), Expect = 3e-151 Identities = 737/1020 (72%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 36969 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 36910 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 36909 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGA 36850 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || || || || || |||||||||| Sbjct 36849 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCAC 36790 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || || || || || | | |||| || | | ||| | ||| | || || | Sbjct 36789 GTAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 36730 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 36729 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAG 36670 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || |||||||||||||| || || | || || | | || | Sbjct 36669 ACCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAG 36610 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || |||||||| || ||||||||| | | ||||| || || ||| | |||| Sbjct 36609 CACGGAATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCGCCAT 36550 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 |||| ||| | || || || | |||| || ||| ||||||||||||||||| ||||||| Sbjct 36549 GAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGT 36490 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| || || | ||| | || |||||||| |||| Sbjct 36489 TCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATCGCCGCTACAC 36430 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 36429 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 36370 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| ||| |||| || || || ||||| || || || | | || ||| Sbjct 36369 CAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATAAGGTCGCAATTGAAC-AGAG 36311 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| ||||||||||| |||||||| ||| | || |||||||| |||||| Sbjct 36310 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGTAGAGCA 36251 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | |||||| || || | ||| ||| || ||| || ||||| | |||||| Sbjct 36250 ACAAAAGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGA 36191 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | |||||| | | | | |||||| ||||| || || || || Sbjct 36190 CCCCATAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTT 36131 Query 24225 AGAAAGTTAGCACCCT-CAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAAC 24283 | ||||| ||| ||| | | ||||||||| || | ||||||||| ||||| || || Sbjct 36130 AAGAAGTT-GCAGCCTTCCAAATAGGAACTGGCTAATCCATGGGTATACCATGAAGTTAC 36072 Query 24284 AAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAG 24343 ||| | |||||| || | |||||| || | || | ||| ||| |||| || | || Sbjct 36071 AAAGGTTGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAG 36012 Query 24344 TCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||||||||| ||||| || || || |||| | |||||| |||| || ||||| Sbjct 36011 GCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 35952 >seq29272 Length=1881 Score = 125 bits (138), Expect = 9e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 32614 GAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGT 32673 ||| | |||||| | | ||| || || |||||||| |||||||| ||| ||||||| Sbjct 1337 GAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGT 1396 Query 32674 GAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTAC 32733 ||| ||||| |||||| |||||||||||||||||| || || || ||||| || Sbjct 1397 GAGAACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACTGGTCAAC 1456 Query 32734 TGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTT 32793 || ||||| |||| || || | ||| || || || || || || | || ||||| Sbjct 1457 GGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGG 1516 Query 32794 TAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 | ||||| |||| |||| || || |||||||| || | ||||||| ||| Sbjct 1517 AAGATCAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACA 1570 >seq29277 Length=523 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 32643 TAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCAT 32702 |||||||| || ||||| |||||||||||||| ||| | ||| | || |||||||||| Sbjct 113 TAACATCACTTGTAGGATAAGCAACACAAGTGAGAACATAACCTGCATCTATTTGATCAT 172 Query 32703 CATCCAAGAACGACT-GATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAA 32761 | | |||||| | | ||| ||||| || |||| || |||| || || |||||| Sbjct 173 CCT-CAAGAAAGCTTCCATCTGACTGGTCAACACTACCTGAGACAACTTTCCCAGCACAA 231 Query 32762 GATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCA 32821 | || || | ||| || | || || || | ||||| ||| | || || |||||| Sbjct 232 GTAGAGCAAGAACCAGCCCTGCATGAATATGGGAGATCAATTCCAGCATCTTCAGCTGCA 291 Query 32822 TCAAGGATGTATTGATCATCAGCACA 32847 ||||| || ||| ||||||| ||| Sbjct 292 TCAAGAATATATGTGTCATCAGGACA 317 >seq40716 Length=1691 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| ||||| | ||| || || |||| ||| ||||||||||| || ||||||| Sbjct 1458 ATCAAAGCGGGTAAAACGTGGGAGTTTTCGGGGTGGAAATTATCATTGGGGCCATATAAA 1517 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || |||||| ||| || ||||| ||| |||||| || || ||||| |||||| Sbjct 1518 TTCGTGGGCATCCCAGAAATTGCATTGAATTTATACTGAATCTGATAAGCCTGGCACATC 1577 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATT 47137 || || ||||| || || || ||||| || | ||||| Sbjct 1578 TTAATCCCAGCTATTTTGGCTATAGCGTACCATTCATT 1615 >seq83019 Length=2865 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 32638 AATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTG 32697 ||||| | ||| || || ||||||||||| || || |||||||| |||| || || || Sbjct 487 AATTACACAATCCGATGTAGGATATGCAACGCATGTAAGCACAAAACCTTTCTCCATCTG 546 Query 32698 ATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGC 32757 | |||||| | ||| || ||| |||||| || | || || || |||| || || Sbjct 547 CTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGC 606 Query 32758 ACAAGATGAACAGGCACCTGCACGACAAGAGTAG 32791 ||||| || |||||||| || ||||| |||||| Sbjct 607 ACAAGTAGAGCAGGCACCAGCCCGACATGAGTAG 640 >seq170570 Length=388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | ||||| || ||| || | |||||||||||| | || | | Sbjct 80 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGAATAGCACATAGTAAAACA 139 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | | | || ||||| |||| |||||||||| |||||||| | |||| |||| | | Sbjct 140 GCACGAAATACACCAGAAACT-CCATCATATGAAAGGGGTTTAATATCCAATTATAAGAC 198 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945 || |||| || | | ||||| || |||| | | ||||| |||| ||| ||||||| Sbjct 199 CCTTGGAAAAAAAAGATGAACCGAAATATCGTCACTACACCAAAACGAGGCTCAAAGAAT 258 Query 23946 CA 23947 || Sbjct 259 CA 260 >seq93305 Length=279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | |||| || | |||| | ||||||| |||| | || || || Sbjct 74 TCACCATCTTCAAATAAAATATTTTCTATAGTAGCGCCATGAA-AGCACATAGCAGAGCA 132 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | |||| || || ||||||||||||||||| |||||||| | ||||| |||| | | Sbjct 133 GCGCCCAATACACAGGCAACTCCCATCATATGAAAGGGGTTCAAAGTCCACTTATAAGAC 192 Query 23886 CCCTGG----AGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAA 23941 | ||| | || || | ||||| || ||||| || ||| |||| ||| ||| Sbjct 193 CATTGGAAAAAAAAAAAGGATGAACCAAAATATCGC--CACTACCATAACTAGGCTCAAG 250 Query 23942 GAACCAAGATGACT 23955 ||||||| | |||| Sbjct 251 GAACCAACAAGACT 264 >seq57145 Length=2655 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 23997 ATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTC 24055 || ||||||| || || || ||||| || ||||| | | || ||| || || ||| Sbjct 1761 ATTGGACCAGGGAATGCTATTGCATTATAAGGACGCAATTGAAC-AGAGCGAGCAGGTTT 1703 Query 24056 AAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCA 24115 ||| ||||||||||| ||||||| ||| || |||||||||||||||||||| | ||| Sbjct 1702 AAATTGACGTAACATGAAACCTAGTAGTCTGAAAGCACCGTGGAGAGCAACAAAAGTCCA 1643 Query 24116 AAGCCC 24121 ||| || Sbjct 1642 AAGACC 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663510494644160