Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19092 104 3e-17 seq80422 100 3e-16 seq89547 93.3 5e-14 seq2110 89.7 6e-13 seq145907 86.0 7e-12 >seq19092 Length=7288 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||||| ||| ||||| || || ||||| || || ||| || || || |||||| Sbjct 4518 CTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGTGAA 4577 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||| ||||| || || | | | ||||| ||||||||||||||||| Sbjct 4578 GCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTC 4637 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||||| || || || ||||| || | | ||| || ||| || || ||||| Sbjct 4638 GGTGCATCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA 4697 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAA 175537 || | ||||| |||||||| || || | ||| | | |||| | | | | || | Sbjct 4698 TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AGGGA 4755 Query 175538 ATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG 175597 |||| || ||||| || || |||| || || | || || |||||||| ||||| | Sbjct 4756 ATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTA 4815 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||||| || | || ||||| || ||||| | | ||| || |||||| ||| | Sbjct 4816 ATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTTGATTCTGCCTTAT 4875 Query 175658 TTCGCCCGGGTCGTTTTGAT 175677 | | || || ||||||||| Sbjct 4876 TGAGGCCTGGACGTTTTGAT 4895 >seq80422 Length=4294 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 1229 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 1288 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 1289 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 1347 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | | |||| | | |||||||||| | ||| Sbjct 1348 TCACAAGGATGATATTGATTCTGCTATTAAAATATACCATATGATGTCCCAAAGATGGTT 1407 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 1408 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 1467 Query 75365 T 75365 | Sbjct 1468 T 1468 >seq89547 Length=5293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 |||||||| || |||||||| || |||||||| ||| || ||||| || | |||| | Sbjct 2984 GCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTC 2925 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208 || ||||| || | ||||| || | ||||||||||| | || || ||||||||| Sbjct 2924 AAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGTTGATCTCGCGAGATGAG 2865 Query 65209 GGTCTCCAC 65217 ||||||||| Sbjct 2864 GGTCTCCAC 2856 >seq2110 Length=919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 162 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 221 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || | Sbjct 222 G--TCCAAGGAAAAGTTGTAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGA 279 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | |||||| | | |||||| ||| | || Sbjct 280 TTCACAAGGATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGT 339 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | | || ||| | || || || || |||||||| ||||||||| | ||| Sbjct 340 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCAG 389 >seq145907 Length=1675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 250 CTGCCTCAGAGTTTGTTGAGTTGTTTGTTGGTGTTGGCGCATCCAGAGTGAGGGATTTGT 191 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || ||| |||||||| || |||||||| |||||||| |||| Sbjct 190 TTGAGAAGGCCAAATCGAAGGCACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGG 131 Query 175505 GCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 | | || | | || || | | | | || ||| || || ||||| || || ||||| Sbjct 130 GGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACTATTAA 73 Query 175563 TCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || | || || |||||||||||| Sbjct 72 TCAGCTTTTGACTGAAATGGATGGCTTT 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594791166365440