Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq195423 506 2e-138 seq9524 96.9 4e-15 >seq195423 Length=63734 Score = 506 bits (560), Expect = 2e-138 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 635 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 694 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | | ||||| | ||| |||| ||| ||| | ||| | | |||||| || || Sbjct 695 GCAC-GATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGA 753 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || | ||| || ||||| |||| |||||| | || ||| || Sbjct 754 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAA 813 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||| | || ||| || || | | ||| |||||||| || | | | | ||||| || Sbjct 814 CCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAA 873 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | ||||| |||||||| |||| ||||| || || |||||||| || |||||||| | Sbjct 874 ACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAG 932 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| |||||||| || | ||||| || ||| || | ||| || || || | Sbjct 933 TTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCC 992 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 993 TGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 1052 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| ||||| || |||||||| ||||| ||||| || ||||||| Sbjct 1053 CACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 1112 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | |||||| || || |||||||| || ||||||||||| |||||||| || || | Sbjct 1113 CAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTT 1172 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||| | ||| || | ||||| || || || || | || ||||| |||||| | Sbjct 1173 GACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAA 1232 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| | ||| | | ||||||| | |||||||||| Sbjct 1233 CAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAAC 1292 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | || ||| ||||| || || || |||| Sbjct 1293 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACC 1352 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || || || || || || || ||||| |||| Sbjct 1353 ATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAG 1412 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| || || ||||||||||| | | || || | |||||||| Sbjct 1413 TAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTT 1472 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 ||||||||||||| ||||| || || ||||||||||| || || | ||||| || || Sbjct 1473 CACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG 1532 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGT 8848 || | || || ||| ||||| | ||| ||||||||||| | ||||| | ||| | Sbjct 1533 TTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTT 1592 Query 8849 TTGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1593 CAGTGCTAGTTATCCA 1608 >seq9524 Length=8324 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/264 (68%), Gaps = 18/264 (7%) Strand=Plus/Plus Query 8134 GCATACTGGAAG-ATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTC 8192 ||||| ||||| || ||| ||||| || ||||||||| ||||||| || || || Sbjct 644 GCATATCGGAAGTATCAATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTC 703 Query 8193 TTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGAT 8252 || ||| ||||||| | || | | || |||| || | ||| || || || | ||| Sbjct 704 CTCCTCTGGACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGAT 763 Query 8253 TAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC 8312 | | ||| || || || |||||||||| || || || || ||| ||| Sbjct 764 CAAACTAGAGGTTACCAAGTAACCGTGCAT----------AGGGAACCGCCAAACGCACC 813 Query 8313 TGCTACCCCT--GCCATA-----TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 |||| ||| | |||| ||||| | ||||| ||||||| | ||||| || |||| Sbjct 814 AGCTAAGCCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGA 873 Query 8366 ATACGAACATGAAGTTAAACGTAC 8389 |||| | ||||||||| || |||| Sbjct 874 ATACAATCATGAAGTTGAAAGTAC 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614026452599360