Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 499 9e-137
>seq195423
Length=63734
Score = 499 bits (552), Expect = 9e-137
Identities = 690/963 (72%), Gaps = 2/963 (0%)
Strand=Plus/Minus
Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313
||| | ||||| ||||| | || ||||| || || | ||||| || | | | ||| |
Sbjct 1596 ACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCC-TACTTTATTGAC 1538
Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373
||| || || |||||||||||||| ||| || || || || || || || || ||
Sbjct 1537 CGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTAT 1478
Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433
|| ||||| || |||| || || | ||||| ||||| || || || || || | |
Sbjct 1477 TCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTAT 1418
Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493
||| | | || || || | || || ||||| || |||||||| || | ||||
Sbjct 1417 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGA 1358
Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553
||||||| | ||||| |||||||| | | || | || | |||||| | |||| ||
Sbjct 1357 TGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 1298
Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613
| ||||||||| || |||||||||||||| | || || || ||| | || |||||
Sbjct 1297 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1238
Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673
|||||| || || |||||||| || || ||||||||||| ||| | | || || |
Sbjct 1237 TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAAT 1178
Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733
|| || || ||||||||||| |||||| | || || || || || ||||| | |||
Sbjct 1177 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCAT 1118
Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793
| | || ||||||||||||||||| || |||||||| || || |||||| | || || ||
Sbjct 1117 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGC 1058
Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853
|| ||||| || || | ||| ||||||||| ||| | |||| || || |
Sbjct 1057 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 998
Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913
|| | || || || ||| | | || || ||||||| || |||||||||||
Sbjct 997 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGA 938
Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973
||| ||||| ||||| || ||||||||||| |||||||| || | ||||||||||||||
Sbjct 937 AGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGC 878
Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033
||| || || ||||| ||| | | |||||||| || ||||| |||||||| ||||||||
Sbjct 877 TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTAT 818
Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093
||||| |||| | || | || |||||||||||||| ||||||||||| || ||
Sbjct 817 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAA 758
Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153
||||||| | | | | | | || | || || || ||||||||||| ||| |||| ||
Sbjct 757 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 698
Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213
||| |||||||| | || || |||||||| || || || || |||||||| || |||||
Sbjct 697 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 638
Query 42214 TGC 42216
||
Sbjct 637 AGC 635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145800314239552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |