Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 592 5e-165
seq9524 102 2e-17
>seq195423
Length=63734
Score = 592 bits (656), Expect = 5e-165
Identities = 731/994 (74%), Gaps = 4/994 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | ||| ||| | ||||| ||||| |||| ||||||
Sbjct 1626 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 1567
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398
||||| ||||||| || | | | | || || | ||| |||||| |||| |||||
Sbjct 1566 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 1508
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||| || ||
Sbjct 1507 TGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1448
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
||| ||||| || || |||||||| | | |||| | || || || | |||||
Sbjct 1447 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 1388
Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578
|| |||| |||||||| || |||| |||||| | ||||||||||| |||||| |
Sbjct 1387 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1328
Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638
||| | || | |||||| | | ||| | | |||| |||| || || ||||||||
Sbjct 1327 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1268
Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698
| | ||| || || ||| | || ||||| |||||| || || || ||||| || ||
Sbjct 1267 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1208
Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758
||||||||| || ||| | |||| ||| | || ||||| |||||| ||||| |||||
Sbjct 1207 AGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 1148
Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818
||| || || || ||||| ||||| |||||| | || ||||||||||| || ||||| ||
Sbjct 1147 TCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 1088
Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878
|||||| || ||||| ||| | || || || || ||||| || || || | ||| ||
Sbjct 1087 TATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 1028
Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938
|||||||||| | || |||||| | | | | ||||| || ||||| |||
Sbjct 1027 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 968
Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998
||| || |||| |||||||||||||| || |||||||| || || || || || ||
Sbjct 967 TAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGG 908
Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057
||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || |
Sbjct 907 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 849
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| || || |||||||| || || || || ||||||||| || | || | || ||||
Sbjct 848 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 789
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || ||||| |||||||| || || |||||||| | ||||||| ||| || ||
Sbjct 788 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 729
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || ||| |||||||||||| | |||||||| |||||||| | || || ||||| |
Sbjct 728 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 669
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
| || ||||| ||||||||||| || || || ||
Sbjct 668 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 635
>seq9524
Length=8324
Score = 102 bits (112), Expect = 2e-17
Identities = 218/320 (68%), Gaps = 18/320 (6%)
Strand=Plus/Minus
Query 42768 TTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCC 42827
|||| |||| |||||||||||| | || ||||||||||| || | ||||||| ||||| |
Sbjct 902 TTCCAGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTC 843
Query 42828 TTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG--TCGTTGTTCTCAGCTATGCAT 42885
||||| ||| | || ||| || ||||| | | | |||| |||||||
Sbjct 842 ATTCCACATG--TTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCAC 788
Query 42886 GGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTAT 42945
||| | || |||||| | | | || ||||| || ||||| ||| | || |
Sbjct 787 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 728
Query 42946 GGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTT 43005
| |||| || |||| ||||||||| ||||| | ||||| | || |||| ||| |||
Sbjct 727 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 668
Query 43006 GGACGGCTTAT-----CTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTC 43059
||||||| ||||| |||||| | |||| ||| || ||||| || |||
Sbjct 667 ----GGCTTATTGATACTTCCGATATGC-TGGTTTCCGCAATTCTCATTCTTTACATTTC 613
Query 43060 TTTCTTGCCGCTTGGCCCGT 43079
|| || | |||||||| ||
Sbjct 612 TTCCTAGATGCTTGGCCTGT 593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143126308651424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |