Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq195423 592 5e-165 seq9524 102 2e-17 >seq195423 Length=63734 Score = 592 bits (656), Expect = 5e-165 Identities = 731/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||| ||||| |||| |||||| Sbjct 1626 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 1567 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 1566 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 1508 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 1507 TGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1448 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || |||||||| | | |||| | || || || | ||||| Sbjct 1447 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 1388 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || |||| |||||||| || |||| |||||| | ||||||||||| |||||| | Sbjct 1387 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1328 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 1327 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1268 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 1267 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1208 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||||||||| || ||| | |||| ||| | || ||||| |||||| ||||| ||||| Sbjct 1207 AGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 1148 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| ||||| |||||| | || ||||||||||| || ||||| || Sbjct 1147 TCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 1088 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | || || || || ||||| || || || | ||| || Sbjct 1087 TATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 1028 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 1027 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 968 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| || |||| |||||||||||||| || |||||||| || || || || || || Sbjct 967 TAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGG 908 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 907 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 849 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| || || |||||||| || || || || ||||||||| || | || | || |||| Sbjct 848 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 789 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||||| |||||||| || || |||||||| | ||||||| ||| || || Sbjct 788 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 729 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||| |||||||||||| | |||||||| |||||||| | || || ||||| | Sbjct 728 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 669 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 668 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 635 >seq9524 Length=8324 Score = 102 bits (112), Expect = 2e-17 Identities = 218/320 (68%), Gaps = 18/320 (6%) Strand=Plus/Minus Query 42768 TTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCC 42827 |||| |||| |||||||||||| | || ||||||||||| || | ||||||| ||||| | Sbjct 902 TTCCAGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTC 843 Query 42828 TTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG--TCGTTGTTCTCAGCTATGCAT 42885 ||||| ||| | || ||| || ||||| | | | |||| ||||||| Sbjct 842 ATTCCACATG--TTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCAC 788 Query 42886 GGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTAT 42945 ||| | || |||||| | | | || ||||| || ||||| ||| | || | Sbjct 787 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 728 Query 42946 GGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTT 43005 | |||| || |||| ||||||||| ||||| | ||||| | || |||| ||| ||| Sbjct 727 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 668 Query 43006 GGACGGCTTAT-----CTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTC 43059 ||||||| ||||| |||||| | |||| ||| || ||||| || ||| Sbjct 667 ----GGCTTATTGATACTTCCGATATGC-TGGTTTCCGCAATTCTCATTCTTTACATTTC 613 Query 43060 TTTCTTGCCGCTTGGCCCGT 43079 || || | |||||||| || Sbjct 612 TTCCTAGATGCTTGGCCTGT 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143126308651424