Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq195423 513 4e-141 seq9524 82.4 2e-11 >seq195423 Length=63734 Score = 513 bits (568), Expect = 4e-141 Identities = 714/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| | ||| ||||||||||| ||||| | | || Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| |||| | ||| |||||| Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| |||||||| ||||||||||| ||||| Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || || |||||| |||| ||||| || Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||||| || ||||||||| || | | || || Sbjct 991 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 1047 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| | ||| |||||||||||||| || |||||||| || || || Sbjct 1048 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1107 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| |||||| ||||| || ||| |||||||| ||||||||||||||| ||| Sbjct 1108 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1167 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||||| ||| || | ||||| ||||| ||||||| | ||||||| || Sbjct 1168 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1227 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1228 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1287 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||||| Sbjct 1288 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1347 Query 41246 TAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | |||| |||||||| || ||||| ||||| | || || || Sbjct 1348 TAACCATTCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTG 1406 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| ||||||||||| || || | || || || |||| Sbjct 1407 CAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 1466 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || || || |||||||| || || || || || |||||||| || || | Sbjct 1467 CAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATA 1526 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | |||||||||||||| | ||| ||| Sbjct 1527 CA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGG 1585 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || |||||||| | ||||||||| || Sbjct 1586 CGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1617 >seq9524 Length=8324 Score = 82.4 bits (90), Expect = 2e-11 Identities = 202/301 (67%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAA-TATT 40790 ||||| | || ||||| |||| | | | |||| ||| ||||||| | || ||| Sbjct 600 AAGCATCTAGGAAGAAATGTAAAGAATGAGAATTGCGGAAACCAGCATATCGGAAGTATC 659 Query 40791 AGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAAC 40850 | | ||||| ||| | || |||| ||| || | ||||| || | || ||||||| Sbjct 660 AATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCTGGACCAAAT 719 Query 40851 TTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACA 40910 | || | | || | |||||| |||| ||||| ||||| || | || || || Sbjct 720 CTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTAGAGGTTACC 779 Query 40911 AGGCTTCCGTGCATAGC-AGCAAACAAA-GCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 | | |||||||||| | | |||| |||||| | ||| ||| | | | || Sbjct 780 AAGTAACCGTGCATAGGGAACCGCCAAACGCACCAGCTAAG---CCTT--AGTCATAACA 834 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | ||||||| |||| |||||| |||| || || ||||| |||| |||||||||||| | Sbjct 835 TGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 894 Query 41029 T 41029 | Sbjct 895 T 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143295428336592