Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq195423 578 4e-160 seq9524 82.4 9e-11 >seq195423 Length=63734 Score = 578 bits (640), Expect = 4e-160 Identities = 709/967 (73%), Gaps = 6/967 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | |||| || || ||||| ||| ||| || || |||| ||||| Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 747 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 748 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 807 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| || | | | || || Sbjct 808 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATT 867 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || || |||||||| || || || Sbjct 868 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATT 927 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| || || || | || || || Sbjct 928 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGT 987 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || || || || Sbjct 988 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 1047 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| || || Sbjct 1048 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1107 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| | || ||||||||||| || || |||||||| | ||||| ||| Sbjct 1108 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1167 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||||| || |||| |||||| ||||| ||||| | || ||||| || || Sbjct 1168 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1227 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| ||||||||||||||||| |||||| || ||||||||||| |||||| Sbjct 1228 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1287 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | || | |||| || ||||| || Sbjct 1288 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1347 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||| |||||||| || || || || || | ||| || || Sbjct 1348 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1407 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||||||||| || ||||| || || | || || || | ||| Sbjct 1408 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1467 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | ||||| || ||||| |||||||| || |||||||| || || || || Sbjct 1468 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1527 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | || ||| |||||||| ||||| |||||||||| || | ||| Sbjct 1528 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1587 Query 68315 ATTGTCA 68321 || ||| Sbjct 1588 GTTTTCA 1594 >seq9524 Length=8324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 209/317 (66%), Gaps = 22/317 (7%) Strand=Plus/Plus Query 67554 ACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATGCATACT 67611 ||||| | ||| | |||||||| || |||| | || ||| |||| ||||| Sbjct 593 ACAGGCCAAGCATCTAGGAAGAAATGTAAAGAATGA--GAATTGCGGAAACCAGCATATC 650 Query 67612 GGAAG-ATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 ||||| ||||| || || || ||||||||| ||||| | |||||| || || ||| Sbjct 651 GGAAGTATCAATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCT 710 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 | || || |||| | | || | || || | || || ||||| | ||| | | | Sbjct 711 GGACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTA 770 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC---- 67786 || || || | |||||||||| || ||||| || || |||| || Sbjct 771 GAGGTTACCAAGTAACCGTGCAT----------AGGGAACCGCCAAACGCACCAGCTAAG 820 Query 67787 ---TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843 || || | ||| ||||||| |||| ||| ||| ||||||| || ||||| || | Sbjct 821 CCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAAT 880 Query 67844 CATGTAGTTAAAAGTAC 67860 |||| |||| ||||||| Sbjct 881 CATGAAGTTGAAAGTAC 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565257073702080