Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 578 4e-160
seq9524 82.4 9e-11
>seq195423
Length=63734
Score = 578 bits (640), Expect = 4e-160
Identities = 709/967 (73%), Gaps = 6/967 (1%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | |||| || || ||||| ||| ||| || || |||| |||||
Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 747
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| |||||||| || | |||||| |||||||| | ||| | ||
Sbjct 748 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 807
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
|||||||||||| | || ||||| | ||||| |||||||| || | | | || ||
Sbjct 808 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATT 867
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||||||| ||||| ||||||||||| || || || || || |||||||| || || ||
Sbjct 868 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATT 927
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||| ||||| ||||| ||||| ||||||| || || || | || || ||
Sbjct 928 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGT 987
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || || || ||
Sbjct 988 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 1047
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| || ||
Sbjct 1048 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1107
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | |||| | || ||||||||||| || || |||||||| | ||||| |||
Sbjct 1108 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1167
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||||| || |||| |||||| ||||| ||||| | || ||||| || ||
Sbjct 1168 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1227
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014
||| ||| ||||||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 1228 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1287
Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074
||| | | || | | |||||| | || | || | |||| || ||||| ||
Sbjct 1288 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1347
Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134
||||| ||||| | | ||| |||||||| || || || || || | ||| || ||
Sbjct 1348 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1407
Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194
||| |||||| || ||||||||||| || ||||| || || | || || || | |||
Sbjct 1408 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1467
Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254
|||||| | ||||| || ||||| |||||||| || |||||||| || || || ||
Sbjct 1468 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1527
Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314
|| | ||| | | || ||| |||||||| ||||| |||||||||| || | |||
Sbjct 1528 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1587
Query 68315 ATTGTCA 68321
|| |||
Sbjct 1588 GTTTTCA 1594
>seq9524
Length=8324
Score = 82.4 bits (90), Expect = 9e-11
Identities = 209/317 (66%), Gaps = 22/317 (7%)
Strand=Plus/Plus
Query 67554 ACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATGCATACT 67611
||||| | ||| | |||||||| || |||| | || ||| |||| |||||
Sbjct 593 ACAGGCCAAGCATCTAGGAAGAAATGTAAAGAATGA--GAATTGCGGAAACCAGCATATC 650
Query 67612 GGAAG-ATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670
||||| ||||| || || || ||||||||| ||||| | |||||| || || |||
Sbjct 651 GGAAGTATCAATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCT 710
Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730
| || || |||| | | || | || || | || || ||||| | ||| | | |
Sbjct 711 GGACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTA 770
Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC---- 67786
|| || || | |||||||||| || ||||| || || |||| ||
Sbjct 771 GAGGTTACCAAGTAACCGTGCAT----------AGGGAACCGCCAAACGCACCAGCTAAG 820
Query 67787 ---TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843
|| || | ||| ||||||| |||| ||| ||| ||||||| || ||||| || |
Sbjct 821 CCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAAT 880
Query 67844 CATGTAGTTAAAAGTAC 67860
|||| |||| |||||||
Sbjct 881 CATGAAGTTGAAAGTAC 897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565257073702080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |