Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq195423 715 0.0 seq9524 102 9e-17 seq195184 89.7 6e-13 seq163170 87.8 2e-12 seq93305 82.4 9e-11 >seq195423 Length=63734 Score = 715 bits (792), Expect = 0.0 Identities = 753/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| || || | || || ||||||||| | || ||| |||||||| | Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| | |||||| ||||| ||||||| ||| | ||||| Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||||||||| || |||||||| ||||| |||||||| || | ||||| || ||||| Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||||| || || || || || || ||||| || || || || Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||||||||| ||||||| || || ||| |||| |||||||| Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 991 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1050 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| ||||| | ||| ||||| |||||||| |||||||||||||| || ||||| Sbjct 1051 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1110 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | |||| | |||||||||||||| || || |||||||| | ||||| || || Sbjct 1111 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1170 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||||| || |||| || ||| || || | |||||||||||||| || || ||||| Sbjct 1171 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGC 1230 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||||||||||| ||||| | ||||||||| ||||| |||||||| Sbjct 1231 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1290 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | |||||| | | | || | ||||||| |||||||| || Sbjct 1291 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1350 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||| ||||||| || ||| |||||||| || || ||||| || | ||| || || || Sbjct 1351 CCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGA 1410 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | |||||| || ||||||||||| || ||||| ||||| || || || |||| |||||| Sbjct 1411 AGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1470 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 |||||||||||| || || || || || |||||||| |||||||||| || || ||||| Sbjct 1471 TTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1530 Query 68738 TGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGT 68797 ||||| | | | ||||||||||||| || || |||||||||| ||||||||||| Sbjct 1531 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGT 1589 Query 68798 TCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | || ||| ||| | ||| | ||||| Sbjct 1590 TTTCAGTGCTAGTTATCCAGTTACAGAA 1617 Score = 572 bits (634), Expect = 2e-158 Identities = 735/1008 (73%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 36969 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 36910 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| ||| || || || ||||| || |||||||||| Sbjct 36909 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGA 36850 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || ||||||||||||| Sbjct 36849 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCAC 36790 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || || || | | || | | ||| |||| | ||| | || || | Sbjct 36789 GTAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 36730 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| |||| Sbjct 36729 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAG 36670 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || ||||| || || |||||||| |||| || | || || | Sbjct 36669 ACCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAG 36610 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| |||||||| |||||||||||| | | |||||| ||||| ||| | |||| Sbjct 36609 CACGGAATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCGCCAT 36550 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||||||| | |||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 36549 GAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGT 36490 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | || || | ||||||||| || || | || | Sbjct 36489 TCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATCGCCGCTACAC 36430 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || ||||| || || || || || || ||| || Sbjct 36429 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 36370 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||| ||||||| || || ||||| || || || | | || ||| Sbjct 36369 CAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATAAGGTCGCA-ATTGAACAGAG 36311 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||||||||| ||||| ||||||| ||||| || || Sbjct 36310 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGTAGAGCA 36251 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| |||||| ||||| || || | |||||| Sbjct 36250 ACAAAAGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGA 36191 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 36190 CCCCATAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTT 36131 Query 67425 AGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | | || | ||| || || | ||| | || | ||| || || ||||| || || Sbjct 36130 A-AGAAGTTGCAGCCTTCCAAATAGGAACTGGCTAATCCATGGGTATACCATGAAGTTAC 36072 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 ||| || || || || | ||| || || | || | ||| ||| ||||| || | ||| Sbjct 36071 AAAGGTTGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAG 36012 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||||||||||| ||||| || || || || | | ||||||||| Sbjct 36011 GCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGTAACCAGTCATC 35964 >seq9524 Length=8324 Score = 102 bits (112), Expect = 9e-17 Identities = 211/315 (67%), Gaps = 18/315 (6%) Strand=Plus/Plus Query 68035 ACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGG 68094 |||||||| ||| | |||||||| || | ||| | || ||| ||| ||||| || Sbjct 593 ACAGGCCAAGCATCTAGGAAGAAATGTAAAGAATGAGAATTGCGGAAACCAGCATATCGG 652 Query 68095 AAG-ATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTG 68153 ||| |||| || || || |||| |||| ||||| | |||||| || || ||| | Sbjct 653 AAGTATCAATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCTGG 712 Query 68154 ACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGA 68213 ||| || |||| | | || | || ||| |||| |||||||| || | || ||| Sbjct 713 ACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTAGA 772 Query 68214 AGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCC 68273 || |||| | |||| ||||| || || || ||||| | ||||| | ||| Sbjct 773 GGTTACCAAGTAACCGTGCAT----------AGGGAACCGCCAAACGCACCAGCTAAGCC 822 Query 68274 G-------AGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCA 68326 | ||| ||||| | |||| || ||| ||||||| || ||||| || | || Sbjct 823 TTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAATCA 882 Query 68327 TGTAGTTGAAAGTAC 68341 || |||||||||||| Sbjct 883 TGAAGTTGAAAGTAC 897 >seq195184 Length=127655 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 14678 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 14619 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 14618 AGCTACTGAGGA 14607 >seq163170 Length=29127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 20000 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 19943 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 19942 TCTACCACTGAGCTACTGAGGA 19921 >seq93305 Length=279 Score = 82.4 bits (90), Expect = 9e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 |||||||||||| | | | |||| |||| ||| | ||||||| | || | |||| ||| Sbjct 74 TCACCATCTTCAAATAAAATATTTTCTATAGTAGCGCCATGAAAG-CACATAGCAGAGCA 132 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTAT 67080 | |||| | || || || |||||||||||||| |||||||| ||||| |||| Sbjct 133 GCGCCCAATACACAGGCAACTCCCATCATATGAAAGGGGTTCAAAGTCCACTTAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570349048628160