Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq43778 102 1e-16
seq89547 98.7 1e-15
seq43799 98.7 1e-15
seq235167 91.5 2e-13
>seq43778
Length=4696
Score = 102 bits (112), Expect = 1e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| |||| || | ||||| || || ||||| |||||||| || |||
Sbjct 3503 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 3444
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| ||| || ||||| || |||||||| || || || ||
Sbjct 3443 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 3384
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| |||||| || || | | || || |||
Sbjct 3383 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTACAAT 3324
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| | || ||||| || ||
Sbjct 3323 ATTCAGAAGGAGTCCACTCTTCACTTGGT 3295
Score = 93.3 bits (102), Expect = 6e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | ||||||||||| || || | || || || |||
Sbjct 3047 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 2988
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| || || |||||||| || ||||| || ||||| ||
Sbjct 2987 GACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 2928
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||||| ||| || |||||||| |||||| || || | ||||||| ||
Sbjct 2927 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 2868
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038
|| || || | || | ||||| ||||| |||
Sbjct 2867 ATTCAGAAGGAATCCACATTGCATTTGGTGTTGAGA 2832
>seq89547
Length=5293
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
||||| ||||| ||| | ||| ||||||| || || || || || ||||| ||
Sbjct 2842 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAAT 2901
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
|| ||||||| || | ||||| ||||||||||||| ||||| | || |||||
Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 2961
Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319
|| ||||| ||||| || ||||| |||||||| || ||||||
Sbjct 2962 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAA 3003
>seq43799
Length=2218
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| | ||||||||||| ||||| | || || ||| ||||
Sbjct 305 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 246
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || |||||| ||||| ||||| || || || || || ||||| ||
Sbjct 245 GACACCATCGACAATGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 186
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | |||| ||| || |||||||| |||||| || ||| | |||| |||||
Sbjct 185 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 126
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| | || ||||| || ||
Sbjct 125 ATCCAGAAAGAATCCACTCTTCACTTGGT 97
>seq235167
Length=544
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208
|| || || ||||| ||||| ||| | |||||||||| || |||| |||||
Sbjct 97 TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAG 156
Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268
|| |||| || ||||||| || | ||||| | ||||||||||| |||||| |
Sbjct 157 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 216
Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318
|| |||||||| || || ||||| || |||||||| | ||| || || ||
Sbjct 217 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAA 266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729690216380800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |