Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 118 2e-21
seq68470 118 2e-21
seq43778 113 9e-20
seq43799 104 5e-17
>seq68514
Length=8688
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398
||| | |||||| ||| ||||| |||| || || || | || ||||||||||| ||
Sbjct 1018 AGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGTTTTCC 959
Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458
|||||||| ||||| |||||||| ||||| || ||||| || ||||| || || ||
Sbjct 958 GGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTT 899
Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518
|||||| || | |||||| || || || ||||| || || || ||||||| ||
Sbjct 898 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 839
Query 192519 TTTAATAAATATCTGCAT 192536
||| | || ||||||||
Sbjct 838 TTTGACGAAGATCTGCAT 821
Score = 109 bits (120), Expect = 1e-18
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | |||||| | || | ||| | || | ||| ||| || || ||||||||||
Sbjct 8672 ACCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGA-ATGTTATAATCAG 8614
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
||| || || |||| || | || || ||||||||||| | ||||| ||||||||||
Sbjct 8613 CTAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTG 8554
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| ||||| || || ||| || ||||| || | ||| || || |
Sbjct 8553 GAATCCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCA 8494
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || ||||| ||||| ||||| | || || | || ||||||||
Sbjct 8493 CCTCCAGGGTAATTGTTTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 8445
>seq68470
Length=2690
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || || || | || | ||| | || | ||| || ||| ||||||||
Sbjct 1120 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 1061
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | ||||| ||||| ||||| || | ||| ||||| |||
Sbjct 1060 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 1001
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| |||||||| ||||| || ||||| || | ||||| ||
Sbjct 1000 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 941
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | |||||| ||||| ||||| | || |||| ||||||||||||
Sbjct 940 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 891
Score = 114 bits (126), Expect = 3e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | ||| | || | ||| || || ||||||||||
Sbjct 1346 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 1287
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| || || |||| || | || || ||||||||||| | ||||| ||||| |||||
Sbjct 1286 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 1227
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| || || || || || || |||||| |||| |||||| || ||
Sbjct 1226 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 1167
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| |||||||| || || ||||| || || || | ||||||||||||
Sbjct 1166 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 1119
>seq43778
Length=4696
Score = 113 bits (124), Expect = 9e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365
|| |||||| | || || | || | ||||||||||| ||| || |||||| || ||
Sbjct 2589 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 2648
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| || || || |||| |||| || || || ||||| || || ||||| ||||| ||
Sbjct 2649 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 2708
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || || || |||||| || |||||| || | ||||| ||
Sbjct 2709 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 2768
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || || |||||||| || || ||||| || | || |||||||||
Sbjct 2769 AACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCACGAAAATCTGCATT 2820
Score = 111 bits (122), Expect = 3e-19
Identities = 171/243 (70%), Gaps = 1/243 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| |||||||| | || || || | || | ||| || ||| ||||||||
Sbjct 3958 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 4017
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| || | ||||||||||||||||| | ||||| ||||| |||
Sbjct 4018 GCGAGGGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 4077
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || || ||| ||| |||||| || | ||| || |||
Sbjct 4078 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCA 4137
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546
|| || || || |||||||| || || | || || | ||| || |||| | |||| ||
Sbjct 4138 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 4196
Query 192547 AAA 192549
|||
Sbjct 4197 AAA 4199
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || || || | || | ||| || ||| || || |||
Sbjct 3502 ATACCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCA 3561
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || |||| || | |||||| ||||||||||| |||||||| ||||| ||
Sbjct 3562 GCTAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGA 3621
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || ||| || ||||| || | || || |||
Sbjct 3622 GGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCA 3681
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| || ||||||||||| | ||||| | ||| ||||||||
Sbjct 3682 ACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 3731
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || ||||| | ||| ||||| | || | || || ||| || || ||
Sbjct 3730 ATACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCT 3789
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| ||| |||| || | |||||| ||||||||||| | || || || || |||
Sbjct 3790 GCAAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGT 3849
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| ||||| || ||||| ||| ||||| || | || || |||
Sbjct 3850 GGGATCCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCC 3909
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || |||||||| || ||||| | || || | ||| || |||||
Sbjct 3910 ACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 3959
Score = 100 bits (110), Expect = 6e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | ||| || | || || || | ||| | ||| || ||||| || ||
Sbjct 3274 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 3333
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | || |||||||||||||| | ||||| || |||||
Sbjct 3334 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 3393
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||| ||||| |||| ||| || ||
Sbjct 3394 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 3453
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| |||||||| || ||||| | || |||| ||| || |||||
Sbjct 3454 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 3503
>seq43799
Length=2218
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || ||||| | || | ||| || ||| || || |||
Sbjct 304 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCA 363
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| || | |||||| || ||||||||||| |||||||||||||||
Sbjct 364 GCAAGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGT 423
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || || || ||||| || | || || |||
Sbjct 424 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCA 483
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| || || |||||||| | ||||| | ||| ||||||||
Sbjct 484 ACCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 533
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| ||||| || | || || || | || | || || ||||||||| |||
Sbjct 988 ATACCACCCCTAAGTCGAAGGACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCA 1047
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| || |||| || | ||||||||||||||||| | ||||| ||||| |||
Sbjct 1048 GCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 1107
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || || || |||||||||| || | || || |||
Sbjct 1108 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCA 1167
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || || || | ||||| | ||| || |||||
Sbjct 1168 ACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 1217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981471795838800
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