Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq68514 109 1e-18 seq43778 107 3e-18 seq68470 100 5e-16 seq43799 91.5 3e-13 >seq68514 Length=8688 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| || ||||| || | || | || |||| ||||||||||| || Sbjct 1018 AGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGTTTTCC 959 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||| || ||||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 958 GGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTT 899 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 898 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 839 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 838 TTTGACGAAGATCTGCAT 821 >seq43778 Length=4696 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||||||||||| ||| || ||||| || || Sbjct 2589 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 2648 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| || || || |||||||| || ||||| || || || Sbjct 2649 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 2708 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || |||||| || |||||| || || ||||| || Sbjct 2709 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 2768 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| || || ||||| || | ||| ||||||||| Sbjct 2769 AACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCACGAAAATCTGCATT 2820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| ||||||||| Sbjct 3046 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 3105 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || ||||| ||||| || Sbjct 3106 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 3164 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || |||||||| || || || |||||| ||| || ||||| ||| Sbjct 3165 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 3224 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 3225 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3275 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | ||| | ||| || |||||| || || Sbjct 3274 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 3333 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||||||||| || | ||||| |||||||| Sbjct 3334 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 3393 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| ||||| |||||||| || || Sbjct 3394 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 3453 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || ||||| | || |||| || || ||||| Sbjct 3454 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 3503 Score = 84.2 bits (92), Expect = 4e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 3958 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 4017 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 4018 GCGAGGGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 4077 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 4078 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCA 4137 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| || || | || || | || || |||| | |||| || Sbjct 4138 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 4196 Query 172078 AAAAA 172082 ||||| Sbjct 4197 AAAAA 4201 >seq68470 Length=2690 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | ||| | || | ||| || || |||||||| Sbjct 1120 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 1061 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||||| ||||| || || || | ||| || || ||| Sbjct 1060 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 1001 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 1000 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 941 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| | || |||| ||||||||||| Sbjct 940 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 891 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | ||| || ||| |||||||| | Sbjct 1346 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 1287 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | || || |||||||| || | ||||| || || ||||| Sbjct 1286 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 1227 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| ||||||||||| || || Sbjct 1226 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 1167 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || || | ||||||||||| Sbjct 1166 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 1119 >seq43799 Length=2218 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||| | ||||| || ||||| ||| Sbjct 76 ATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT 135 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | || || ||||||||||| | ||||| || || ||| Sbjct 136 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGT 195 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| ||| ||||| || || || || ||| Sbjct 196 GGGATACCCTCCTTGTCTTGAATTTTTGCTTTCACATTGTCGATGGTGTCAGAACTTTCA 255 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| ||||| | ||||| | || |||||||| Sbjct 256 ACCTCAAGAGTAATTGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902437699070400