Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19092 132 1e-25 seq75124 127 6e-24 seq145907 120 9e-22 seq13125 120 9e-22 seq80422 93.3 1e-13 seq38305 89.7 2e-12 seq2110 89.7 2e-12 seq70000 87.8 5e-12 seq93762 84.2 6e-11 >seq19092 Length=7288 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 4811 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 4752 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 4751 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 4698 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 4697 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 4640 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 4639 CCGACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 4581 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 4580 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 4521 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| ||| || || ||||||| |||| | || Sbjct 4520 AAGAACACCCTTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAA 4461 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 4460 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 4401 >seq75124 Length=5777 Score = 127 bits (140), Expect = 6e-24 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || | || || || ||||| | || | ||| Sbjct 4132 CCCACTGCATCTATTTCATCAATAAACACCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 4190 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | ||||| || | Sbjct 4191 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAATTCCGATCC 4250 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 4251 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 4310 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 4311 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCGGC 4370 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| || ||| | |||| ||||| || | || || | |||||| ||||| Sbjct 4371 GAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGTTTTGCTTCATC 4430 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 4431 AACTCCAGCAACATCATCAAATGT 4454 >seq145907 Length=1675 Score = 120 bits (132), Expect = 9e-22 Identities = 284/419 (68%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 45 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 104 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 105 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 158 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 159 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 218 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 219 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 277 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 278 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 336 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 337 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 396 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 || | || | | ||| ||||||| | |||| || || ||||||||||| || || Sbjct 397 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGTGAT 455 >seq13125 Length=4036 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | || || | ||| || || || || ||| || || Sbjct 2373 CATTATATCTTCCATTGCCTTCACTAGCCGCCTCTGGATGTATCCGGTCTCAGAAGTCTT 2314 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 2313 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 2254 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 2253 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCCGGCCCATAATCATC 2194 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 2193 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCTTCCA 2135 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 2134 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 2075 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 2074 CAGCTGTCACCAT 2062 >seq80422 Length=4294 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 156044 AAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || ||||||||| |||||||| ||||| || ||||| | ||| || || Sbjct 1795 AAAAATACCCTTTCTCTTGCCACCTCCCTGATCCACATAACGGGCAGTATCATTAAACAC 1736 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 1735 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 1676 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 1675 TGCACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 1616 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||| ||| |||||||| ||| Sbjct 1615 CTCCTTCAAAGTTTCATAGATTCCTTCGATACTATCATCTTTCAT 1571 >seq38305 Length=3123 Score = 89.7 bits (98), Expect = 2e-12 Identities = 170/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| ||||||||||| ||| ||||| ||||| |||||||| | ||| || || Sbjct 2328 AAGTACCCTTCCTCTTGCCTCCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTT 2269 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| |||||||||| ||||| ||||| | || | ||| || | Sbjct 2268 GGAGCATCGGGACAATGCCATTGGAAGATCCATTTGTTCCATGGATGTAACTACCTGAGG 2209 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 || | ||||||||| || ||||| || || | |||| || ||| || | Sbjct 2208 CACGGATATTATGAATGGAGAGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACT 2149 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 |||| | |||| | || |||||||| ||||||| ||| | | ||| |||| Sbjct 2148 CCTTCAGGGTATCATATATGCCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGC 2089 Query 156283 AACTTAATTG 156292 |||||| || Sbjct 2088 TACTTAACTG 2079 >seq2110 Length=919 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 761 AATTACCCTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCC 702 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| ||||||| || | || Sbjct 701 GCAGCATTGGCACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTG 642 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 641 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 582 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 581 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 539 >seq70000 Length=5125 Score = 87.8 bits (96), Expect = 5e-12 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || |||||||| | | || || | | ||||| || | Sbjct 2045 ACCAATTGCATCTATCTCATCAATGAATACAATACTAGGTGCACACTGTCTTGCTTCTTG 1986 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| | |||| |||| |||||| ||||||| | ||| || || | Sbjct 1985 AAACAAGCTCCGTACTCTAGATGGCCCAACTCCAACAAACATTTCCATAAAATCTGACCC 1926 Query 289149 GGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || |||| | ||| | ||| || ||| || || |||| | || ||||||||| Sbjct 1925 AGACATACTG--AGGAAAGGCACACCTGATTCACCAGCAGTTGCCTTTGCAAGAAGTGTC 1868 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || ||||| ||||| || || | | || | || ||||| | ||| || |||||| Sbjct 1867 TTCCCTGTGCCAGGGGGGCCTACAAGAAGTGCACCTTTTGGAATTTTCGCTCCCAGCTC- 1809 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | ||| |||| | || | ||||| ||| || ||| | || ||||| Sbjct 1808 CTCATACTTTTTTGGGTTCTTCAGGAAGTGTACAAACTCCATAATTTCTTGCTTAGCCTC 1749 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || |||||||| Sbjct 1748 ATCACAGCCAGCTACATC 1731 >seq93762 Length=7777 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||||||||| | ||||||||| || || ||||| |||||||| ||| Sbjct 4573 GCACCATGAGCAATCATACAATCTCTCTCCATTTCTCCAAATCGAAGGCCACCATCCCGA 4632 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||||| |||||||| | || ||| | | |||||| | || ||| Sbjct 4633 GATCGTCCCTCAGCAGGCTGCCTTGTAAGAATCTGTACAGGACCCCTACCACGAGAATGG 4692 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||||| ||||| ||||| || | ||||| ||| ||| || | ||| || Sbjct 4693 ATTTTATCATCAACCATGTGCTTCAGTCTTTGGTAATATGTGGGGCCAAGGAATAT 4748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467320273666456