Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 625 3e-174
seq29272 118 1e-21
>seq195423
Length=63734
Score = 625 bits (692), Expect = 3e-174
Identities = 735/989 (74%), Gaps = 4/989 (0%)
Strand=Plus/Minus
Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639
||||| | ||| ||||| || | |||||||| || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698
||||| || ||| | ||| | ||||| ||||| || || |||||||| | ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758
|| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818
|| || |||||||| || | || |||| || || ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878
|||||||| ||||| ||||||| ||| | || || || ||||||| | || | ||
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938
| |||||| | ||||| | | |||||||| ||||||||||||||| | |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998
| | |||||||| || ||||| ||| |||||||| ||||| || || ||||| ||||
Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199
Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058
||| ||| | |||| || |||||||||| ||| || |||| ||||||||| || ||
Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139
Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118
|||||||||||| || | |||| |||||||||| || || ||||||||||||||||||||
Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079
Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178
||||| ||| | || || ||||| |||||||| || || || ||| ||||||||| ||
Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019
Query 158179 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158237
| || || | || | | || | ||||| || |||| || || || |
Sbjct 1018 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960
Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297
|||||| ||||||||||||||||| || ||||| ||||| || || || || || || |
Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900
Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357
| || |||||||||||||| ||| |||||||| || ||||| || || |||||||| |
Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840
Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417
|||| |||||||| || || ||||||||||| || | || | ||| ||||| ||||
Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780
Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477
|| | || |||||||| |||||||| || | ||||| |||| |||||||| | || |
Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720
Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537
||||||| ||| | | || || ||| ||||||||||||||||||||||| ||||| |
Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660
Query 158538 CACACAACTTCCCACTCGACCTTGCTGCT 158566
| || |||||||| || ||||| ||||||
Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631
Score = 527 bits (584), Expect = 7e-145
Identities = 725/1008 (72%), Gaps = 4/1008 (0%)
Strand=Plus/Plus
Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365
||||||||| | | || || || |||||||| || |||||||| ||| | || ||
Sbjct 35964 GATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTT 36023
Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425
|| ||| ||| | || | || |||||| | || |||||| | ||||| || |||
Sbjct 36024 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGG 36083
Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484
|| ||||| || | || ||||||||| | || || ||| ||||| | || || || ||
Sbjct 36084 TATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGT 36142
Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544
||||| |||||| | | | | |||||| | | |||| ||||||||||| | ||
Sbjct 36143 TTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACA 36202
Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604
|| |||| || ||||| ||| | || || | |||| |||||| || || |||||
Sbjct 36203 AGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGG 36262
Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664
||| |||| ||||| ||||||||| | ||||| |||||||| || || ||| | ||
Sbjct 36263 TGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG-CTCTGTTCAAT 36321
Query 159665 C-CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723
|| ||||| ||||| || || ||||||| ||| |||||||||||||| || ||||
Sbjct 36322 TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCC 36381
Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783
| || || ||| | |||||||| ||||||| || || || ||||| || || || |
Sbjct 36382 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGA 36441
Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843
| ||| ||||| | | || | ||||| ||||| || ||||| || || ||||| ||||
Sbjct 36442 TATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATA 36501
Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903
||||||||||||| ||| || | || | || || || ||||||| ||||||| ||| |
Sbjct 36502 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCG 36561
Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963
|||| || || | | ||||||||| || ||||| || || || ||| | |||
Sbjct 36562 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAA 36621
Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023
| |||| || || || || || |||||||| || |||||||| ||||| || ||||| |
Sbjct 36622 CGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTG 36681
Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083
| |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | |
Sbjct 36682 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 36741
Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATT 160143
|| | |||| || |||| | | ||||| || || || || |||||||| || |
Sbjct 36742 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACT 36801
Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203
|||| || || ||| | ||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 36802 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAA 36861
Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263
| || || || ||||| || | ||||| ||| |||| || ||||| || |||||||
Sbjct 36862 ATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 36921
Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311
|| |||| ||||| || || || | || | || ||||| |||||||
Sbjct 36922 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 36969
>seq29272
Length=1881
Score = 118 bits (130), Expect = 1e-21
Identities = 136/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 158753 ATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCT 158812
||||| || || || |||||||| || ||||| || ||||| || | ||||| |||
Sbjct 1552 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 1493
Query 158813 TGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTC 158872
|||||||| ||| | || ||| |||| |||||||| ||||| ||| || || ||
Sbjct 1492 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 1433
Query 158873 TTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCT 158932
| || |||||||| |||| || ||| |||||||| || |||| || ||||||||| |
Sbjct 1432 CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGT 1373
Query 158933 GAT 158935
|||
Sbjct 1372 GAT 1370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546739641076160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |