Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 529 2e-145
seq9524 82.4 9e-11
>seq195423
Length=63734
Score = 529 bits (586), Expect = 2e-145
Identities = 711/987 (72%), Gaps = 8/987 (1%)
Strand=Plus/Minus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|| ||| | ||| |||| |||||| || ||| | ||| |||||||||||||||| ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354
|||||||| | | | || || || || || ||| | || ||||| |||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1498
Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414
||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| |||||
Sbjct 1497 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1438
Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474
|| || |||||||| | |||| |||| || ||||| || || || || || ||
Sbjct 1437 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1378
Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534
|||||||| || | | || || ||||| || || || |||||||| || || || ||
Sbjct 1377 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1318
Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594
| |||||| | |||| | || ||||||||| | |||||||||| | | |
Sbjct 1317 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1258
Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654
|| || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| |||
Sbjct 1257 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 1198
Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714
|| ||| | | || ||| ||||||| || || |||||||||||||| ||||| |||
Sbjct 1197 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1138
Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774
|| ||||| ||||| |||||| | || ||||| || || |||||||| || ||||||||
Sbjct 1137 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 1078
Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834
||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| |||
Sbjct 1077 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 1018
Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894
|| | || || || | | ||||| || || ||||| || || | || ||
Sbjct 1017 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 958
Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954
|| | ||||| ||||| |||||||| ||||| || || |||||||| || || || ||
Sbjct 957 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 898
Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014
|||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| |||
Sbjct 897 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 838
Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074
| | |||||||| || | ||||| || | | ||||| | || ||||| ||||||
Sbjct 837 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 778
Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 73130
| || || ||||| ||||||||||| || || ||| ||| || | | ||||
Sbjct 777 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 718
Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190
|||| ||| || |||| | || |||||||| |||||||||||||||||| | ||
Sbjct 717 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 662
Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217
||| || |||||||| |||||||||||
Sbjct 661 TGCTCATAACTTCCCTCTAGACCTAGC 635
Score = 345 bits (382), Expect = 5e-90
Identities = 698/1038 (67%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423
||||| || | ||||| |||||| ||| || || ||||| || | || ||||||||
Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011
Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483
|| || || || |||||||| || | || | || ||||||||| ||| || || ||
Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071
Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543
|| || |||||||| || ||||| | || || ||| | || || || || |||
Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36131
Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603
|| || ||||| || || |||| | || | | | ||| | | ||||| || |||||
Sbjct 36132 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36191
Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663
|| || |||||||||||| || || |||| ||||||||| || || |||| |||||
Sbjct 36192 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36251
Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723
|| |||| || | || ||||| |||||||||||| | | || ||||| |||| |
Sbjct 36252 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36311
Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783
|||| | || ||||| || ||| |||| || || || || || || ||
Sbjct 36312 TCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTT 36371
Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843
| || || || ||||| |||| ||| | |||||||||| || ||| || |||
Sbjct 36372 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 36431
Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903
|| || || || ||||| | || | || | || || || || ||| || | ||
Sbjct 36432 GTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 36491
Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963
|| |||||||||||||| || || ||| || | || | || | ||||||||||| |||
Sbjct 36492 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCAT 36551
Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023
|| || || ||| | || || || | |||||| || | | | |
Sbjct 36552 GGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 36594
Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083
||| | || ||| | || || | || || || | ||||| || ||| ||| |
Sbjct 36595 CAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTC 36650
Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143
|| |||||| | || ||||| || || ||||| | || ||||| || ||| | | |||
Sbjct 36651 ACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 36710
Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203
|| ||| ||||||| || ||||| || | ||| | |||| || | || | ||
Sbjct 36711 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 36770
Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263
|| ||||| || ||||| | || || ||||| || || || || || | ||||| |||
Sbjct 36771 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 36830
Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323
|| || || ||||| || |||||||| || || |||||| | || || ||||| | ||
Sbjct 36831 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 36890
Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383
|||||| | || ||||| || ||||| ||| || | ||||| || || || | ||
Sbjct 36891 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 36950
Query 74384 CGAGGCAACGCACTATAA 74401
|| || ||||| || |||
Sbjct 36951 CGTGGAAACGCTCTTTAA 36968
>seq9524
Length=8324
Score = 82.4 bits (90), Expect = 9e-11
Identities = 212/318 (67%), Gaps = 20/318 (6%)
Strand=Plus/Minus
Query 72719 GTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCC 72778
|||| |||||||||||| | || ||||| || || |||| ||| || |||| | ||||
Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838
Query 72779 A-----TATGGC--AGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCAC 72831
| |||| | ||| |||| ||| ||| || ||| || || ||||||
Sbjct 837 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGT--TCCCT--------ATGCAC 788
Query 72832 GGTTCACTT-GTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTA 72890
|||| |||| || || || | | ||| | || || ||||| || || || || |
Sbjct 787 GGTT-ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGA 729
Query 72891 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950
| || | || || | ||| || ||||| || | ||||| ||||||||| || ||
Sbjct 728 AAGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTT 669
Query 72951 CGGTAGATTAAT-CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCC 73009
|| ||| || ||||| ||||| ||| ||| |||| ||| ||||| |||||||
Sbjct 668 TGGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCC 609
Query 73010 TCGCTGTATTCCCTGTAG 73027
| | || | |||||||
Sbjct 608 TAGATGCTTGGCCTGTAG 591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571165806511040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |