Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq195423 529 2e-145 seq9524 82.4 9e-11 >seq195423 Length=63734 Score = 529 bits (586), Expect = 2e-145 Identities = 711/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || ||| | ||| |||||||||||||||| || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1498 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1497 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1438 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 1437 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1378 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | || || ||||| || || || |||||||| || || || || Sbjct 1377 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1318 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1317 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1258 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 1257 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 1198 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 1197 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1138 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| Sbjct 1137 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 1078 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 1077 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 1018 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || || || | | ||||| || || ||||| || || | || || Sbjct 1017 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 958 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 957 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 898 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 897 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 838 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| || | | ||||| | || ||||| |||||| Sbjct 837 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 778 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 73130 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 777 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 718 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 717 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 662 Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217 ||| || |||||||| ||||||||||| Sbjct 661 TGCTCATAACTTCCCTCTAGACCTAGC 635 Score = 345 bits (382), Expect = 5e-90 Identities = 698/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || || ||||| || | || |||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | || || ||| | || || || || ||| Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36131 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | ||| | | ||||| || ||||| Sbjct 36132 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36191 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 36192 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36251 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || |||| || | || ||||| |||||||||||| | | || ||||| |||| | Sbjct 36252 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36311 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| |||| || || || || || || || Sbjct 36312 TCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTT 36371 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| |||| ||| | |||||||||| || ||| || ||| Sbjct 36372 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 36431 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || || || || ||||| | || | || | || || || || ||| || | || Sbjct 36432 GTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 36491 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 || |||||||||||||| || || ||| || | || | || | ||||||||||| ||| Sbjct 36492 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCAT 36551 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || || || ||| | || || || | |||||| || | | | | Sbjct 36552 GGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 36594 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| | || ||| | || || | || || || | ||||| || ||| ||| | Sbjct 36595 CAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTC 36650 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 36651 ACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 36710 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 36711 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 36770 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || ||||| || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 36771 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 36830 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 36831 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 36890 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 36891 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 36950 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 36951 CGTGGAAACGCTCTTTAA 36968 >seq9524 Length=8324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Minus Query 72719 GTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCC 72778 |||| |||||||||||| | || ||||| || || |||| ||| || |||| | |||| Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838 Query 72779 A-----TATGGC--AGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCAC 72831 | |||| | ||| |||| ||| ||| || ||| || || |||||| Sbjct 837 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGT--TCCCT--------ATGCAC 788 Query 72832 GGTTCACTT-GTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTA 72890 |||| |||| || || || | | ||| | || || ||||| || || || || | Sbjct 787 GGTT-ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGA 729 Query 72891 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950 | || | || || | ||| || ||||| || | ||||| ||||||||| || || Sbjct 728 AAGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTT 669 Query 72951 CGGTAGATTAAT-CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCC 73009 || ||| || ||||| ||||| ||| ||| |||| ||| ||||| ||||||| Sbjct 668 TGGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCC 609 Query 73010 TCGCTGTATTCCCTGTAG 73027 | | || | ||||||| Sbjct 608 TAGATGCTTGGCCTGTAG 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571165806511040