Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq89547 197 2e-44 seq221053 167 3e-35 seq590 167 3e-35 seq235167 129 7e-24 seq13057 96.9 4e-14 seq589 87.8 2e-11 >seq89547 Length=5293 Score = 197 bits (218), Expect = 2e-44 Identities = 224/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | | |||| || || ||| Sbjct 3142 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGG 3201 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| ||||| ||||||||| |||||||||||| ||| || || Sbjct 3202 ACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAG 3261 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 3262 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 3320 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| |||||||| | ||| || ||||| || |||| Sbjct 3321 GAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGT 3379 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| | || | || ||||| | | ||| || | ||| || Sbjct 3380 ACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCGGGATT 3434 Score = 116 bits (128), Expect = 5e-20 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 2961 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | ||| ||||| || || ||| | Sbjct 2962 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCC------G 3015 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 3016 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 3075 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| ||| ||||||| | | ||| |||| || || || | || ||||| || Sbjct 3076 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 3134 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || || || || ||||| || | ||||||||||| ||||||||| || || |||| | Sbjct 2575 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTGGAC 2634 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 ||| |||| || | || |||| | | || | || ||||||||||| ||| Sbjct 2635 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATG 2694 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 ||||| | ||| | | | ||||| || | | ||| |||||||| |||| |||| Sbjct 2695 TACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCACGGCAGCGCATCGCACACA 2754 Query 868898 AACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| |||| ||||| || ||||| Sbjct 2755 AACTCTCTCTCTATCTCCACCGCCTC 2780 >seq221053 Length=525 Score = 167 bits (184), Expect = 3e-35 Identities = 215/294 (73%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 519 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 460 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || ||||||| | | || ||||| ||| || || |||| ||||||||| Sbjct 459 ACTTCTTTTATGAACCTGGCTGCGAGGTTTTCGAGAACAATTCCGTTCGAGGCGGCGAAG 400 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| |||| ||||| ||||||| | | || || |||| ||| | Sbjct 399 AAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGAGTTTAGGGATTCCCACTGGCAG 340 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| | ||||| |||||||| | ||||| | || || ||| | || ||||| Sbjct 339 ATGTCCTGCGAT-AGGTCGACCTCCTCTACCGTCCAAAATGAAGCTTCGACTTTCTTGTA 281 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||| | | || | |||| |||| || || | | || |||| ||||| Sbjct 280 CATTTCCTAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCAGGGTT 227 >seq590 Length=6039 Score = 167 bits (184), Expect = 3e-35 Identities = 215/293 (73%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 869634 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGA 869693 |||||||||||||||||||||| ||||||||||| ||||| | | |||| ||||||| Sbjct 1621 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCTCGCGCCTCGAAGACTTGGA 1680 Query 869694 CCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAA 869753 | || ||||||||| | | || ||||| ||| || || | ||| ||||||||| | Sbjct 1681 CTTCTTTCATGAACATGGCTGCGAGGTTTTCGAGGACAATTCTGTCCAAGGCGGCGAAGA 1740 Query 869754 AAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGG 869813 | || || | ||| |||| ||||| |||||| || | || || |||| ||| || Sbjct 1741 AGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTAGGGATTCCCATTGG-CGA 1799 Query 869814 TGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | ||| || |||| |||||||| || ||||| | || || ||||| || |||||| Sbjct 1800 TGTCCTGCGATG-GGTCGACCTCCTCTGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTAC 1858 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 || ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 1859 ATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 1911 Score = 95.1 bits (104), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 || || ||||| | | |||||| || | ||| || || ||||||||||||||||||||| Sbjct 1376 AGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCCGAGAAA 1435 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC 869335 || || || |||||| |||||| | || || | ||| || || || || ||| Sbjct 1436 AATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATGTCTCCGAGCC---- 1491 Query 869336 TTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 ||||||||| || ||||| || | | |||| || ||| |||||| || ||| Sbjct 1492 --GTTGATCCAATTTCAGGCCCAATCTGGC-TTTTGGAAACGCACGACACCGTTTCAATG 1548 Query 869396 GCGCGAAAGAGGTGGTCCTTTTCG 869419 ||| |||| | | || ||||||| Sbjct 1549 GCGTGAAATAAGCGGCTCTTTTCG 1572 >seq235167 Length=544 Score = 129 bits (142), Expect = 7e-24 Identities = 177/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| ||||| | |||||||| || | |||||| || ||||||||||||||| Sbjct 157 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 216 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| |||||| | || || | ||| || || || || | Sbjct 217 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 276 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || |||||||||| Sbjct 277 CC------GTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTT 330 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | ||||||||| | | || ||||||| | | || || | || || || | ||| Sbjct 331 TCAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGG 390 Query 869450 AGCGAATA 869457 ||||| || Sbjct 391 AGCGAGTA 398 Score = 129 bits (142), Expect = 7e-24 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 406 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 465 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| ||||| ||| ||||| || || ||||||||| Sbjct 466 ACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAG 525 Query 869753 AAAGCCAGGACGTGCTTGA 869771 || || || |||||| ||| Sbjct 526 AAGGCGAGCACGTGCGTGA 544 >seq13057 Length=2330 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 11 GCAGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 70 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 71 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 121 >seq589 Length=4664 Score = 87.8 bits (96), Expect = 2e-11 Identities = 168/248 (68%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| | ||| | |||||||| || | | |||| || ||||||||||||| Sbjct 4411 AAGGTTAGGCCCGACATTAACCCGCGCTTTTTCAACTAAAATATCACGCAGAAACTGCCT 4470 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| ||||| | || || | ||| || || || || | Sbjct 4471 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 4530 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || || ||||||| Sbjct 4531 CCATC------GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACCGCACCGTT 4584 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | |||||||| | | | ||||||| | | || || | || || || | || Sbjct 4585 TCAAAAGCGCGAAATAAGCAGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGA 4644 Query 869450 AGCGAATA 869457 ||||| || Sbjct 4645 AGCGAGTA 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6087567757880696