Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq72069 93.3 3e-14 seq68514 89.7 4e-13 seq68470 86.0 5e-12 seq71848 84.2 2e-11 seq43778 82.4 6e-11 >seq72069 Length=2032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||| || ||||| |||| ||| |||||||| |||| Sbjct 193 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 252 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| |||||| | || ||||| ||||||||||| || || ||| | ||| |||| Sbjct 253 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 308 >seq68514 Length=8688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| |||||||| ||||| | |||||||| || || ||| ||||| |||| Sbjct 7986 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 8045 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 8046 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 8105 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || || || || || | | | || |||| |||||| Sbjct 8106 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 8165 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 8166 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 8217 >seq68470 Length=2690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | ||||||||||| ||||| ||||| ||| | Sbjct 207 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 266 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| || || | ||| ||| || Sbjct 267 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAG 326 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || || |||||||| ||||| | | | || |||| ||||||||| Sbjct 327 CAGAGGCTTATCTTCGCTGGAAAACAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 386 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || || || Sbjct 387 ATACAGAAGGAGTCAAC 403 >seq71848 Length=4061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | ||||| || || || ||| | || |||| | Sbjct 4028 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 3969 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| ||||| | ||| ||| || Sbjct 3968 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 3909 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||| | | | || |||| ||||| ||| Sbjct 3908 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 3849 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| ||| | ||| | ||||| | ||| | || |||| Sbjct 3848 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAA 3800 >seq43778 Length=4696 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 |||| ||| || || ||||| || |||| || || | || |||||||||||||| || Sbjct 2918 ATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACATTCAGAAG 2859 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || ||||| ||||||| |||||||| || |||| Sbjct 2858 GAATCCACATTGCATTTGGTGTTGAGACTGCGTGGAGGAA 2819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411641645958584