Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 178 2e-38
seq235167 165 1e-34
seq590 125 1e-22
seq69335 118 2e-20
seq221053 116 6e-20
>seq89547
Length=5293
Score = 178 bits (196), Expect = 2e-38
Identities = 210/285 (74%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439
|| ||||| | |||||||| ||||||||||| || || || ||||| || ||||| ||
Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 2961
Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499
|| ||||| ||| ||||| ||| | | ||| |||||||| ||| ||| ||
Sbjct 2962 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCCGTC---- 3017
Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559
|||||| || | ||||||| || || || || |||| ||||| |||||||||
Sbjct 3018 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 3075
Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619
||||||| ||| ||| ||| | | ||| |||| ||| || || | || ||||||||
Sbjct 3076 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 3135
Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
| || ||||||||||| |||||||||||||||||||| || |||
Sbjct 3136 ATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 3180
Score = 140 bits (154), Expect = 5e-27
Identities = 195/268 (73%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| || ||||||||| ||||||| | ||||| |||||||| |||||||||
Sbjct 3187 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 3246
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||| || || |||||||| |||||| ||| ||||| |||||| || | ||
Sbjct 3247 TCGGAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 3306
Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
| |||||||| | | | || ||| || || || ||||| ||||||||||| || |
Sbjct 3307 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACG 3364
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387
| ||||| || |||||||| ||||| || || | || | || ||||||| ||| |
Sbjct 3365 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATC 3424
Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
||| ||| || | ||| ||||||||
Sbjct 3425 GATCGGGATTTGGGGCTAGAAGCGGCTC 3452
Score = 91.5 bits (100), Expect = 2e-12
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985
|| || || || ||||| || | ||||||||||| ||||||||| || || |||| |
Sbjct 2575 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTGGAC 2634
Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044
||| ||||| || |||| |||| || ||| || | || ||||| || || ||
Sbjct 2635 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAA-CAATCTATCCGCGACAAACTCTAT 2693
Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103
|||||| | ||| | | | ||||| || | | ||| ||| ||||||| |||| |
Sbjct 2694 GTACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCAC-GGCAGCGCATCGCACA 2752
Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTC 794131
|||||||| |||| ||||| || |||||
Sbjct 2753 CAAACTCTCTCTCTATCTCCACCGCCTC 2780
>seq235167
Length=544
Score = 165 bits (182), Expect = 1e-34
Identities = 209/288 (73%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
||||| ||||| | |||||||| || | |||||| || || |||||||||||||||||
Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 222
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
|| || || || ||| |||||| | | || | ||| || || || ||| ||| ||
Sbjct 223 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 281
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
|||||| || | ||||| || |||||||| || | |||||||| || | |
Sbjct 282 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 336
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616
|||||||| | | || ||| ||| | | || || | ||| || || | |||||||||
Sbjct 337 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 396
Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
|| | || ||||||||||| ||||||||||| |||||||| || |||
Sbjct 397 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 444
>seq590
Length=6039
Score = 125 bits (138), Expect = 1e-22
Identities = 203/290 (70%), Gaps = 9/290 (3%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| || ||||| | | |||||| || | ||| || || || ||||||||||||||||||
Sbjct 1376 AGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCCGAGAAA 1435
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
|| || || |||||| |||||| | | || | ||| || || || ||| |||
Sbjct 1436 AATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATGTCTCCGAGCC---- 1491
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
||||||||| || ||||| |||| | |||| || | | |||||| || |||
Sbjct 1492 --GTTGATCCAATTTCAGGCCCAATCTGGC-TTTTGGAAACGCACGACACCGTTTCAATG 1548
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCG--ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614
||| |||| | | || ||| ||| | | | || | ||| || | | |||||||
Sbjct 1549 GCGTGAAATAAGCGGCTCTTTTCGTCAAAGTTTTTTTTATGTAAGTTTTTAGAAGGAGCG 1608
Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
|||| | || |||||||||| ||||||||||| |||||||| || |||
Sbjct 1609 AGTACATTTCGAAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 1658
Score = 118 bits (130), Expect = 2e-20
Identities = 191/269 (71%), Gaps = 7/269 (3%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||| |||||||| || |||||||| | | || ||||| || || || | |
Sbjct 1665 GCCTCGAAGACTTGGACTTCTTTCATGAACATGGCTGCGAGGTTTTCGAGGACAATTCTG 1724
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| ||||||||| |||||||| | ||| |||| ||||| |||||| || | ||
Sbjct 1725 TCCAAGGCGGCGAAGAAGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTAGG 1784
Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328
|| |||| ||| | |||| ||| | ||||||||||||| || |||||||| || ||
Sbjct 1785 GATTCCCATTGG-CGATGTCCTGCGATG-GGTCGACCTCCTCTGCCGTCCAAAATGAAGC 1842
Query 796329 CTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386
||||| || |||||||| |||| || |||| |||| |||| || |||| ||
Sbjct 1843 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 1900
Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| | ||||| | ||||||||||||
Sbjct 1901 CGGTCTGGGTTTGGGGTTAGCAGCGGCTC 1929
>seq69335
Length=9224
Score = 118 bits (130), Expect = 2e-20
Identities = 174/244 (71%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| |||
Sbjct 4024 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 3965
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| || | |||||||||||||||||| | | |||||| |||||| |
Sbjct 3964 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 3905
Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
||| || || ||||| | ||| || |||| |||||||||| || ||||
Sbjct 3904 TCGCGAGACGAGACGCCTCTTGGGCCAAT-TTCTCGAAGATGTCGTTGATGAAACTGTTC 3846
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | ||| ||||||| || | || || || |||||||| || ||||||
Sbjct 3845 ATGATGCCCATGGCCTTGCTGGAGATACCGATATCTGGATGAACCTGCTTCAGGACCTTG 3786
Query 1485709 TAAA 1485712
|||
Sbjct 3785 AAAA 3782
>seq221053
Length=525
Score = 116 bits (128), Expect = 6e-20
Identities = 190/269 (71%), Gaps = 6/269 (2%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| |||||||| || || ||||| | | | || ||||| || || || |||
Sbjct 474 GCCTCGGAGACTTGGACTTCTTTTATGAACCTGGCTGCGAGGTTTTCGAGAACAATTCCG 415
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
| ||||||||| |||||||| |||||| |||| ||||| ||||||| | | ||
Sbjct 414 TTCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGAGTTTAGG 355
Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328
|| |||| ||| |||| ||| |||||||||||||| | |||||||| || ||
Sbjct 354 GATTCCCACTGGCAGATGTCCTGCGAT-AGGTCGACCTCCTCTACCGTCCAAAATGAAGC 296
Query 796329 CTCGGCCTTTTTGTACATCTCC--CATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386
||| | || |||||||| ||| || |||| |||| |||| || |||| ||
Sbjct 295 TTCGACTTTCTTGTACATTTCCTAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 238
Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| | |||||| | |||||||| |||
Sbjct 237 CGGTCAGGGTTCAGGGTTAGCAGCGCCTC 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7890877343696232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |