Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq89547 178 2e-38 seq235167 165 1e-34 seq590 125 1e-22 seq69335 118 2e-20 seq221053 116 6e-20 >seq89547 Length=5293 Score = 178 bits (196), Expect = 2e-38 Identities = 210/285 (74%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 2961 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| |||||||| ||| ||| || Sbjct 2962 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCCGTC---- 3017 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 3018 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 3075 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 3076 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 3135 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| |||||||||||||||||||| || ||| Sbjct 3136 ATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 3180 Score = 140 bits (154), Expect = 5e-27 Identities = 195/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 3187 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 3246 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| || || |||||||| |||||| ||| ||||| |||||| || | || Sbjct 3247 TCGGAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 3306 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| ||||||||||| || | Sbjct 3307 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACG 3364 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || | || | || ||||||| ||| | Sbjct 3365 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATC 3424 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | ||| |||||||| Sbjct 3425 GATCGGGATTTGGGGCTAGAAGCGGCTC 3452 Score = 91.5 bits (100), Expect = 2e-12 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || || || ||||| || | ||||||||||| ||||||||| || || |||| | Sbjct 2575 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTGGAC 2634 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| ||||| || |||| |||| || ||| || | || ||||| || || || Sbjct 2635 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAA-CAATCTATCCGCGACAAACTCTAT 2693 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 |||||| | ||| | | | ||||| || | | ||| ||| ||||||| |||| | Sbjct 2694 GTACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCAC-GGCAGCGCATCGCACA 2752 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||||||| |||| ||||| || ||||| Sbjct 2753 CAAACTCTCTCTCTATCTCCACCGCCTC 2780 >seq235167 Length=544 Score = 165 bits (182), Expect = 1e-34 Identities = 209/288 (73%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| ||||| | |||||||| || | |||||| || || ||||||||||||||||| Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 222 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| |||||| | | || | ||| || || || ||| ||| || Sbjct 223 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 281 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | |||||||| || | | Sbjct 282 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 336 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | || || | ||| || || | ||||||||| Sbjct 337 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 396 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 397 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 444 >seq590 Length=6039 Score = 125 bits (138), Expect = 1e-22 Identities = 203/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | | |||||| || | ||| || || || |||||||||||||||||| Sbjct 1376 AGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCCGAGAAA 1435 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || |||||| |||||| | | || | ||| || || || ||| ||| Sbjct 1436 AATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATGTCTCCGAGCC---- 1491 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 ||||||||| || ||||| |||| | |||| || | | |||||| || ||| Sbjct 1492 --GTTGATCCAATTTCAGGCCCAATCTGGC-TTTTGGAAACGCACGACACCGTTTCAATG 1548 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCG--ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614 ||| |||| | | || ||| ||| | | | || | ||| || | | ||||||| Sbjct 1549 GCGTGAAATAAGCGGCTCTTTTCGTCAAAGTTTTTTTTATGTAAGTTTTTAGAAGGAGCG 1608 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| | || |||||||||| ||||||||||| |||||||| || ||| Sbjct 1609 AGTACATTTCGAAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 1658 Score = 118 bits (130), Expect = 2e-20 Identities = 191/269 (71%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||| |||||||| || |||||||| | | || ||||| || || || | | Sbjct 1665 GCCTCGAAGACTTGGACTTCTTTCATGAACATGGCTGCGAGGTTTTCGAGGACAATTCTG 1724 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| | ||| |||| ||||| |||||| || | || Sbjct 1725 TCCAAGGCGGCGAAGAAGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTAGG 1784 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| | |||| ||| | ||||||||||||| || |||||||| || || Sbjct 1785 GATTCCCATTGG-CGATGTCCTGCGATG-GGTCGACCTCCTCTGCCGTCCAAAATGAAGC 1842 Query 796329 CTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| |||| || |||| |||| |||| || |||| || Sbjct 1843 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 1900 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | ||||| | |||||||||||| Sbjct 1901 CGGTCTGGGTTTGGGGTTAGCAGCGGCTC 1929 >seq69335 Length=9224 Score = 118 bits (130), Expect = 2e-20 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 4024 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 3965 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||| | | |||||| |||||| | Sbjct 3964 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 3905 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| || || ||||| | ||| || |||| |||||||||| || |||| Sbjct 3904 TCGCGAGACGAGACGCCTCTTGGGCCAAT-TTCTCGAAGATGTCGTTGATGAAACTGTTC 3846 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | || || || |||||||| || |||||| Sbjct 3845 ATGATGCCCATGGCCTTGCTGGAGATACCGATATCTGGATGAACCTGCTTCAGGACCTTG 3786 Query 1485709 TAAA 1485712 ||| Sbjct 3785 AAAA 3782 >seq221053 Length=525 Score = 116 bits (128), Expect = 6e-20 Identities = 190/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || || ||||| | | | || ||||| || || || ||| Sbjct 474 GCCTCGGAGACTTGGACTTCTTTTATGAACCTGGCTGCGAGGTTTTCGAGAACAATTCCG 415 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 | ||||||||| |||||||| |||||| |||| ||||| ||||||| | | || Sbjct 414 TTCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGAGTTTAGG 355 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| |||||||||||||| | |||||||| || || Sbjct 354 GATTCCCACTGGCAGATGTCCTGCGAT-AGGTCGACCTCCTCTACCGTCCAAAATGAAGC 296 Query 796329 CTCGGCCTTTTTGTACATCTCC--CATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||| | || |||||||| ||| || |||| |||| |||| || |||| || Sbjct 295 TTCGACTTTCTTGTACATTTCCTAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 238 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | |||||||| ||| Sbjct 237 CGGTCAGGGTTCAGGGTTAGCAGCGCCTC 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7890877343696232