Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq72069 95.1 1e-14
seq68514 86.0 5e-12
>seq72069
Length=2032
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
|| || |||||| | || ||||||||||||||| |||| ||| |||||||| ||||
Sbjct 193 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 252
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| | || ||| | || || || ||||||||||||||||| ||| | ||| |||| ||
Sbjct 253 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 312
Query 107769 AG 107770
||
Sbjct 313 AG 314
>seq68514
Length=8688
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| ||| | || || ||||| |||||| | || |||| |
Sbjct 8445 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 8504
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || |||||| ||||| ||||| | || ||||||
Sbjct 8505 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 8564
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || | || || || |||
Sbjct 8565 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAAC 8624
Query 107736 ATTCAAAAGGAGTCTAC 107752
|||||||||||||| ||
Sbjct 8625 ATTCAAAAGGAGTCCAC 8641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397717435662232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |