Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq208088 109 4e-19 seq43799 107 1e-18 seq68514 93.3 3e-14 seq43779 93.3 3e-14 seq43778 93.3 3e-14 seq68153 89.7 3e-13 seq71848 82.4 5e-11 >seq208088 Length=533 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 121 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 180 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 181 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 240 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| ||| | ||| |||| ||||||| |||||| Sbjct 241 ATCCCTTCCTTGTCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCGGAGCTTTCCAC 299 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || |||||||||||||||||| Sbjct 300 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 348 >seq43799 Length=2218 Score = 107 bits (118), Expect = 1e-18 Identities = 173/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 523 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 582 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| |||||||| || | | ||| Sbjct 583 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGC 642 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 643 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 701 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 |||| ||||| |||| ||||| || || || || | || |||||||||||||| Sbjct 702 AGAGCTT---TCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTG 758 Query 33747 CATA 33750 |||| Sbjct 759 CATA 762 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 762 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 821 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 822 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 881 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 882 GATCCCTTCCTTGTCCTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 940 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || ||||| || || || | || |||||||||||||||||| Sbjct 941 CCTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 990 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 97 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 156 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 157 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 216 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| ||| ||| | |||||| ||| || |||| || || ||||| Sbjct 217 ATTTTTGCTTTCA-CATTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 275 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||||||||||||| Sbjct 276 TCCAGTGAGGGTTTTCACAAAGATCTGCATA 306 >seq68514 Length=8688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 8444 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 8385 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 8384 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTGG 8325 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||||| || | | | ||| | |||||| ||| | Sbjct 8324 GATCCCTTCCTTGTCCTGGATTTT-TGCCTTGATGTTGTCAATGGTGTCAGAGCT---CT 8269 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 8268 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217 >seq43779 Length=2831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || | |||||||| | || || | |||||| || |||||| Sbjct 1 TCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAA 60 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | ||||| ||| | || | ||||| ||||| ||| || ||| | ||| Sbjct 61 ATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATT 119 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| |||||| |||||| |||| ||||| ||||| || || | || ||||| Sbjct 120 GTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTAC 179 Query 33738 AAAGATCTGCATA 33750 ||||||||||||| Sbjct 180 AAAGATCTGCATA 192 >seq43778 Length=4696 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || | Sbjct 3732 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 3791 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 3792 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 3851 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| | ||| |||| |||||| |||| | Sbjct 3852 GATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCCGAGCTT---T 3907 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 3908 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 3959 >seq68153 Length=714 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 275 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 334 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || | | | || |||| || || || || || |||||||||||| Sbjct 335 TTGTAATCCGCAAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 394 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || |||| | ||||| ||||| || || | | || | ||| | ||||| Sbjct 395 TGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATCGTGTC 453 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | |||||||| || || |||| ||||| || || |||||||| Sbjct 454 GGAGCTCTCAACTTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513 >seq71848 Length=4061 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 ||||||||| | | ||| | || | || |||||| ||| ||||| ||||||||||| Sbjct 3570 GTCACCACCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATC 3629 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || ||| || || | || || | || || ||||| || || | | |||||| || | Sbjct 3630 GGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGG 3689 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | || |||||||| || || ||| || | ||| | |||||| | Sbjct 3690 AGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCGGAGCTCT 3748 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || ||||| || || ||||||||||| Sbjct 3749 CCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 3800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327748597992960