Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 560 3e-155
>seq195423
Length=63734
Score = 560 bits (620), Expect = 3e-155
Identities = 720/983 (73%), Gaps = 10/983 (1%)
Strand=Plus/Minus
Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569
||||||| | ||| || | ||||| ||||| |||| |||||||| |||||||
Sbjct 1612 TAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT 1553
Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628
|| | | | | || || |||| || ||||| || |||||||| ||||| ||||
Sbjct 1552 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1494
Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688
| || ||||| || || || ||||| || || || || |||||||||||||| || |
Sbjct 1493 TAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 1434
Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746
| || || || | |||| | | ||| || || || | || || ||||| || ||
Sbjct 1433 TTTCTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATG 1376
Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806
|||||| || ||||||||||| | ||||| || || || | | || | || |
Sbjct 1375 GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCT 1316
Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866
|||||| | |||| | | ||||||||| || |||||||||||||| | || ||
Sbjct 1315 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1256
Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926
|| ||| | ||||||||| |||||| || || ||||| |||||||| || |||| ||
Sbjct 1255 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGT 1196
Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985
||||| | ||||||| | ||||| || || || || |||| ||||||| | || ||||
Sbjct 1195 -TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 1137
Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045
| ||||| ||||| | |||| | |||||||| || || || ||||| || |||||||| |
Sbjct 1136 CTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 1077
Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105
|||||||| | || || |||||||||||||| || || ||||||||||| ||||| ||||
Sbjct 1076 TCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 1017
Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164
| | || || || | | ||| | | || || || ||| | ||| | || |||
Sbjct 1016 CCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 958
Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224
|||| || || ||||| ||||| || ||||| |||||||| ||||| ||||| |||||
Sbjct 957 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 898
Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284
|| |||||||||||||| ||| |||||||||| |||||| |||| |||||||| |||
Sbjct 897 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 838
Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344
|| ||||| || ||||| || |||||| |||| || || || || ||||| || ||
Sbjct 837 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 778
Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404
| || |||||||| || ||||| || | | || | | |||||||| ||| ||||
Sbjct 777 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 718
Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464
|||||||| ||| | ||||||||||| || || | || || ||||||||||| ||||||
Sbjct 717 TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 658
Query 20465 CATAACTTCCCACTTGACCTTGC 20487
||||||||||| || ||||| ||
Sbjct 657 CATAACTTCCCTCTAGACCTAGC 635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148407310141104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |