Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq235167 91.5 1e-13 >seq235167 Length=544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 ||||| |||||| |||||||||| | |||||| | || |||||||| || | | Sbjct 326 GTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCG---GAG 270 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || ||| | || | || || || || ||||| | || || ||||||||| Sbjct 269 ACATTCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGT 210 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 || ||| || |||| | |||| || ||||||||||||| || ||| ||| Sbjct 209 TTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAAC 150 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG 46981 ||| | |||||||| || |||||||| ||| || || ||||| Sbjct 149 GAGCTAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475190374351680