Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq89547 280 2e-69 seq235167 232 1e-54 seq590 223 5e-52 seq221053 150 3e-30 seq69335 95.1 2e-13 seq589 87.8 3e-11 >seq89547 Length=5293 Score = 280 bits (310), Expect = 2e-69 Identities = 407/562 (72%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | | ||||| | |||| | ||||||| || | || | | Sbjct 3452 GAGCCGCTTCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTATCCACA 3394 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || ||||||||||| ||||| || || | Sbjct 3393 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 3335 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 3334 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 3277 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| ||| || ||| ||| |||||||| ||||||||| ||||| Sbjct 3276 GCACGTGCTCGCCTTCTTT-GCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 3218 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| ||| || ||||| ||||||||||||| Sbjct 3217 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCCA 3158 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 3157 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 3098 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 3097 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 3038 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || || ||||| ||| | | ||| Sbjct 3037 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTTGCGGAGAGATTAATCG 2984 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 2983 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 2924 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 2923 AAAAGCGCGGGTTAATGCCGGG 2902 >seq235167 Length=544 Score = 232 bits (256), Expect = 1e-54 Identities = 287/389 (74%), Gaps = 9/389 (2%) Strand=Plus/Minus Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||| |||||| |||||||| || ||||||| ||||| ||||| ||| ||||| ||| Sbjct 544 TCACGCACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCC 486 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | | | || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||| Sbjct 485 GCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATC 426 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 |||||||| ||||||||||| |||| ||||||||||| | || || ||| | || || Sbjct 425 GCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAAC 366 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | | ||| ||| || | | ||||||||| | || |||||||||| || |||||| Sbjct 365 TCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAG 306 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTC 1456187 ||||| ||||| | || |||||| || ||| || || || || ||| | || Sbjct 305 GCCGATTGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTG 252 Query 1456188 GTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 | | |||||| |||| || || || || |||||||||||||||||||| || |||||| Sbjct 251 ATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGG 192 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | || |||||||| | ||||| || || Sbjct 191 TTGAAAAAGCGCGGGTTAATGCCGGGCCT 163 >seq590 Length=6039 Score = 223 bits (246), Expect = 5e-52 Identities = 395/565 (70%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 1929 GAGCCGCTGCTAACCCCAAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 1870 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || ||||||||||||| Sbjct 1869 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCAGAGGAGGTCGACC- 1812 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| | ||| |||| || || | || |||||| || ||||||| || Sbjct 1811 CATCGCAGGACATCG-CCAATGGGAATCCCTAACCGCTGACGAGAAACACTTCATCACGC 1753 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 | | |||||||| || ||||||| || | || || ||| ||||| || | | Sbjct 1752 ATGAGCTCGCCTTCTT-CGCCGCCTTGGACAGAATTGTCCTCGAAAACCTCGCAGCCATG 1694 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | ||||| || || ||||| ||||| ||||||||| Sbjct 1693 TTCATGAAAGAAGTCCAAGTCTTCGAGGCGCGAGCCTTCTACGGCTTCCAAATCGCCATC 1634 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT--CAAGGACCCGG 1456072 || |||||||||| |||| ||||||||||| | | || ||| | || || | Sbjct 1633 GAGAACATCCACTTCGAAATGTACTCGCTCCTTCTAAAAACTTACATAAAAAAAACTTTG 1574 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| || | | |||| |||||| || |||||| ||| || ||||| | | Sbjct 1573 ACGAAAAGAGCCGCTTATTTCACGCCATTGAAACGGTGTCGTGCGT-TTCCAAAAGCCAG 1515 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCG 1456191 | ||||| || ||||||||| ||| || || || || ||| | || | | Sbjct 1514 ATTGGGCCTGAAATTGGATCAAC------GGCTCGGAGACATTCGCGGAGAGACTAATAG 1461 Query 1456192 GCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 |||||| ||||||| || || ||||||||||||||||||||||| || || ||| | | Sbjct 1460 CGTTTGCCTGCGTCGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTGTGGTTAA 1401 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||| | | ||||| || || Sbjct 1400 AAAAGCGCAGGTTAATGCCGGGGCT 1376 >seq221053 Length=525 Score = 150 bits (166), Expect = 3e-30 Identities = 228/319 (71%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||| ||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 209 GAGGCGCTGCTAACCCTGAACCCTGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 268 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || | |||||||||| | |||| | || || || |||||||| | |||||||||||||| Sbjct 269 ATCTAGGAAATGTACAAGAAAGTC-GAAGCTTCATTTTGGACGGTAGAGGAGGTCGACCT 327 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||| ||| |||| || || | | ||||||| || ||||||| || Sbjct 328 AT-CGCAGGACATCTGCCAGTGGGAATCCCTAAACTCCGACGAGAAACACTTCATCACGC 386 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| | || || || ||| ||||| || | | | Sbjct 387 ACGTGCTCGCCTTCTT-CGCCGCCTCGAACGGAATTGTTCTCGAAAACCTCGCAGCCAGG 445 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || || ||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 446 TTCATAAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 505 Query 1456015 GAAAACATCCACTCTGAAA 1456033 || ||||||||||| |||| Sbjct 506 GAGAACATCCACTCCGAAA 524 >seq69335 Length=9224 Score = 95.1 bits (104), Expect = 2e-13 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| |||| ||||| ||||||||| || |||||||||| |||| || || Sbjct 3822 CTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGACATCTTCGAGAA-ATTGG 3880 Query 725018 CACC-GAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 | | ||||| ||| || ||| | | ||||||| |||||| || | |||| Sbjct 3881 CCCAAGAGGCGTCTCGTCTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGA 3940 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 |||||||||||||| | || || ||| ||| ||| |||||| ||||||||| || |||| Sbjct 3941 TCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGG 4000 Query 725137 GCACCA 725142 | |||| Sbjct 4001 GGACCA 4006 >seq589 Length=4664 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGAC 1456083 ||||| |||| |||||||| || | || || ||| | || || | | ||| ||| | Sbjct 4664 CACTCCGAAATGTACTCGCTTCTTCTAGAAACGTACATAAAAAACTCCGACGAAAAGAGC 4605 Query 1456084 CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATG 1456143 | | |||||||| | || ||||||| || || ||||||||||| ||||| | Sbjct 4604 TGCTTATTTCGCGCTTTTGAAACGGTGCGGTGCGTTGCCAAAAAGGCCGATTGGGCCCTA 4545 Query 1456144 AAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGC 1456201 || |||||| || ||| || || || || ||| | || | | ||||| || Sbjct 4544 AATTGGATC------GATGGCTCGGAGACATTCGCGGAGAGACTGATAGCGTTTGCTTGC 4491 Query 1456202 GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260 || || || || || ||||| ||||||||||||| || |||| | | || |||||||| Sbjct 4490 GTGGAAGGGATATTCTTCTCAGGCAGTTTCTGCGTGATATTTTAGTTGAAAAAGCGCGG 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7154808594059056