Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 280 2e-69
seq235167 232 1e-54
seq590 223 5e-52
seq221053 150 3e-30
seq69335 95.1 2e-13
seq589 87.8 3e-11
>seq89547
Length=5293
Score = 280 bits (310), Expect = 2e-69
Identities = 407/562 (72%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774
|||||||| || || | | | ||||| | |||| | ||||||| || | || | |
Sbjct 3452 GAGCCGCTTCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTATCCACA 3394
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
|| |||||||||||| | |||| |||| || || ||||||||||| ||||| || || |
Sbjct 3393 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 3335
Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892
| ||| || | | | |||||||| | | || | || |||||| || ||| |||
Sbjct 3334 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 3277
Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952
|||||| |||||||| ||| || ||| ||| |||||||| ||||||||| |||||
Sbjct 3276 GCACGTGCTCGCCTTCTTT-GCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 3218
Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012
| || |||| |||||||| | | ||||| ||| || ||||| |||||||||||||
Sbjct 3217 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCCA 3158
Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072
|||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | |
Sbjct 3157 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 3098
Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
||| ||| ||| ||||||| ||||||||| ||||| || | || || || |||
Sbjct 3097 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 3038
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCG 1456191
|||||| | || |||||| || ||| || || ||||| ||| | | |||
Sbjct 3037 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTTGCGGAGAGATTAATCG 2984
Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250
||||| |||| ||||| || || ||||| || ||||| ||||| || ||||||||||
Sbjct 2983 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 2924
Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272
| |||||||| | ||||| ||
Sbjct 2923 AAAAGCGCGGGTTAATGCCGGG 2902
>seq235167
Length=544
Score = 232 bits (256), Expect = 1e-54
Identities = 287/389 (74%), Gaps = 9/389 (2%)
Strand=Plus/Minus
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
||| |||||| |||||||| || ||||||| ||||| ||||| ||| ||||| |||
Sbjct 544 TCACGCACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCC 486
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| | | || |||||||| |||||| | | ||||| ||| || ||||| ||||| |||
Sbjct 485 GCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATC 426
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|||||||| ||||||||||| |||| ||||||||||| | || || ||| | || ||
Sbjct 425 GCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAAC 366
Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128
| | ||| ||| || | | ||||||||| | || |||||||||| || ||||||
Sbjct 365 TCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAG 306
Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTC 1456187
||||| ||||| | || |||||| || ||| || || || || ||| | ||
Sbjct 305 GCCGATTGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTG 252
Query 1456188 GTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246
| | |||||| |||| || || || || |||||||||||||||||||| || ||||||
Sbjct 251 ATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGG 192
Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
| || |||||||| | ||||| || ||
Sbjct 191 TTGAAAAAGCGCGGGTTAATGCCGGGCCT 163
>seq590
Length=6039
Score = 223 bits (246), Expect = 5e-52
Identities = 395/565 (70%), Gaps = 16/565 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||||||||| | ||||| |||| || | |||| || |||| |||| |
Sbjct 1929 GAGCCGCTGCTAACCCCAAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 1870
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| |||||||||||| | |||| |||| || || |||||||| || |||||||||||||
Sbjct 1869 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCAGAGGAGGTCGACC- 1812
Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
| ||| | ||| | ||| |||| || || | || |||||| || ||||||| ||
Sbjct 1811 CATCGCAGGACATCG-CCAATGGGAATCCCTAACCGCTGACGAGAAACACTTCATCACGC 1753
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
| | |||||||| || ||||||| || | || || ||| ||||| || | |
Sbjct 1752 ATGAGCTCGCCTTCTT-CGCCGCCTTGGACAGAATTGTCCTCGAAAACCTCGCAGCCATG 1694
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| |||||||| |||||| | ||||| || || ||||| ||||| |||||||||
Sbjct 1693 TTCATGAAAGAAGTCCAAGTCTTCGAGGCGCGAGCCTTCTACGGCTTCCAAATCGCCATC 1634
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT--CAAGGACCCGG 1456072
|| |||||||||| |||| ||||||||||| | | || ||| | || || |
Sbjct 1633 GAGAACATCCACTTCGAAATGTACTCGCTCCTTCTAAAAACTTACATAAAAAAAACTTTG 1574
Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
||| ||| || | | |||| |||||| || |||||| ||| || ||||| | |
Sbjct 1573 ACGAAAAGAGCCGCTTATTTCACGCCATTGAAACGGTGTCGTGCGT-TTCCAAAAGCCAG 1515
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCG 1456191
| ||||| || ||||||||| ||| || || || || ||| | || | |
Sbjct 1514 ATTGGGCCTGAAATTGGATCAAC------GGCTCGGAGACATTCGCGGAGAGACTAATAG 1461
Query 1456192 GCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250
|||||| ||||||| || || ||||||||||||||||||||||| || || ||| | |
Sbjct 1460 CGTTTGCCTGCGTCGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTGTGGTTAA 1401
Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275
| |||||| | | ||||| || ||
Sbjct 1400 AAAAGCGCAGGTTAATGCCGGGGCT 1376
>seq221053
Length=525
Score = 150 bits (166), Expect = 3e-30
Identities = 228/319 (71%), Gaps = 4/319 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||| ||||||| | ||||| |||| || | |||| || |||| |||| |
Sbjct 209 GAGGCGCTGCTAACCCTGAACCCTGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 268
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| | |||||||||| | |||| | || || || |||||||| | ||||||||||||||
Sbjct 269 ATCTAGGAAATGTACAAGAAAGTC-GAAGCTTCATTTTGGACGGTAGAGGAGGTCGACCT 327
Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
||| | ||| ||| |||| || || | | ||||||| || ||||||| ||
Sbjct 328 AT-CGCAGGACATCTGCCAGTGGGAATCCCTAAACTCCGACGAGAAACACTTCATCACGC 386
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
|||| |||||||| || ||||||| | || || || ||| ||||| || | | |
Sbjct 387 ACGTGCTCGCCTTCTT-CGCCGCCTCGAACGGAATTGTTCTCGAAAACCTCGCAGCCAGG 445
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| || ||||| |||||| | | ||||| ||| || ||||| ||||| |||||||||
Sbjct 446 TTCATAAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 505
Query 1456015 GAAAACATCCACTCTGAAA 1456033
|| ||||||||||| ||||
Sbjct 506 GAGAACATCCACTCCGAAA 524
>seq69335
Length=9224
Score = 95.1 bits (104), Expect = 2e-13
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
||||| |||| ||||| ||||||||| || |||||||||| |||| || ||
Sbjct 3822 CTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGACATCTTCGAGAA-ATTGG 3880
Query 725018 CACC-GAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076
| | ||||| ||| || ||| | | ||||||| |||||| || | ||||
Sbjct 3881 CCCAAGAGGCGTCTCGTCTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGA 3940
Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136
|||||||||||||| | || || ||| ||| ||| |||||| ||||||||| || ||||
Sbjct 3941 TCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGG 4000
Query 725137 GCACCA 725142
| ||||
Sbjct 4001 GGACCA 4006
>seq589
Length=4664
Score = 87.8 bits (96), Expect = 3e-11
Identities = 164/239 (69%), Gaps = 8/239 (3%)
Strand=Plus/Minus
Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGAC 1456083
||||| |||| |||||||| || | || || ||| | || || | | ||| ||| |
Sbjct 4664 CACTCCGAAATGTACTCGCTTCTTCTAGAAACGTACATAAAAAACTCCGACGAAAAGAGC 4605
Query 1456084 CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATG 1456143
| | |||||||| | || ||||||| || || ||||||||||| ||||| |
Sbjct 4604 TGCTTATTTCGCGCTTTTGAAACGGTGCGGTGCGTTGCCAAAAAGGCCGATTGGGCCCTA 4545
Query 1456144 AAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGC 1456201
|| |||||| || ||| || || || || ||| | || | | ||||| ||
Sbjct 4544 AATTGGATC------GATGGCTCGGAGACATTCGCGGAGAGACTGATAGCGTTTGCTTGC 4491
Query 1456202 GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260
|| || || || || ||||| ||||||||||||| || |||| | | || ||||||||
Sbjct 4490 GTGGAAGGGATATTCTTCTCAGGCAGTTTCTGCGTGATATTTTAGTTGAAAAAGCGCGG 4432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7154808594059056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |