Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq195423 623 1e-173 seq29272 96.9 4e-15 seq57145 95.1 1e-14 seq175372 91.5 2e-13 seq170570 87.8 2e-12 seq83019 87.8 2e-12 seq93305 86.0 7e-12 >seq195423 Length=63734 Score = 623 bits (690), Expect = 1e-173 Identities = 754/1018 (74%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || || || || ||||| ||||||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | || | || |||||| | || ||||| || ||| Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || ||||| ||||| || | || |||||||| | ||||| ||| || || | Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTT 36130 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGG 36190 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 |||||| | ||||| || || |||||||| ||| | || || ||||| | ||||| Sbjct 36191 TCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGT 36250 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 |||||| |||||||| |||| || |||||||| ||| |||| ||||||||| ||||||| Sbjct 36251 TGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 36310 Query 159738 -TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 ||| ||| | || ||||| ||||| || || ||||||| ||| ||||||||||||| Sbjct 36311 CTCT-GTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTG 36369 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | |||||||| || |||||||| ||||||||| ||||||||||| |||||||| | Sbjct 36370 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 36429 Query 159857 GGGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCC 159913 | ||||| || || ||| ||| |||| || |||| ||||||| || || ||||| Sbjct 36430 GTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACAT 36486 Query 159914 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAA 159973 | |||||||| ||||||||||||||||| ||| || | || | || ||| | ||||| | Sbjct 36487 TGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCA 36546 Query 159974 TCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTA 160033 | ||||| ||||| ||||| || || || ||||||||||| || ||||||||||| Sbjct 36547 TTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCC 36606 Query 160034 AGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160093 || ||| | || || |||| ||||| || ||||| |||||||| || |||||||| | Sbjct 36607 GTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTT 36666 Query 160094 GGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160153 |||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| | Sbjct 36667 GGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 36726 Query 160154 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACC 160213 |||| || || | ||| |||||| || |||| | | || || || | |||| Sbjct 36727 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACC 36786 Query 160214 TTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGA 160273 | |||||||| || ||||| ||||| || | ||||| ||||||||||||||||||| Sbjct 36787 TACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGA 36846 Query 160274 CCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTG 160333 | |||||||| || || || || || || || || |||||||||||||||| || | Sbjct 36847 CTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAG 36906 Query 160334 ATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 |||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 36907 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 Score = 603 bits (668), Expect = 1e-167 Identities = 731/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| |||| || | ||||| | || |||||||||| ||||| | Sbjct 1618 CTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTT 1559 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || |||||||| | ||||||| Sbjct 1558 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 1500 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || |||||||| || || ||||| ||| |||| || || | ||||| |||| Sbjct 1499 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1440 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || || |||||||| || |||||| ||| || || ||| | || || ||||| | Sbjct 1439 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1380 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| ||||| |||| || ||| | || || || ||||||| | || | | Sbjct 1379 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1320 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | || ||||| |||||||||||||| || || Sbjct 1319 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1260 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || ||||||| || Sbjct 1259 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | |||| || |||||||||| ||| || |||| ||||||||| || | Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 ||||||||||||| || | |||| |||||||||| || || ||||||||||||||||||| Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | ||||| ||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 | | || || | || | | || | ||||| || |||| || || || Sbjct 1019 GTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 961 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| | ||||||||||| ||||| || || || ||||| || || || || || || Sbjct 960 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 901 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || |||||||||||||| ||| |||||||| || ||||| || || |||||||| Sbjct 900 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 841 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| || || ||||||||||| || | || | || ||||| ||| Sbjct 840 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 781 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 780 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 721 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 |||||||| ||| | | || || ||| ||||||||||||||||||||||| ||||| Sbjct 720 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 661 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCT 158662 || || |||||||| || || || |||||| Sbjct 660 GCTCATAACTTCCCTCTAGACCTAGCTGCT 631 >seq29272 Length=1881 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 158847 ATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCC 158906 ||||| || ||||| ||||| || || ||||| || || || || | ||||| || Sbjct 1552 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 1493 Query 158907 TGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTC 158966 || ||||||||| |||| ||| |||| ||||| |||||||| || || || Sbjct 1492 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 1433 Query 158967 TTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCAC 159022 ||||||||||||| |||| |||||| ||| | || || |||| ||||||| || Sbjct 1432 CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAAC 1377 >seq57145 Length=2655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 159665 TTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAAT 159724 ||||| | |||||||||||||||||||| ||| || ||||||| ||| |||| |||| Sbjct 1641 TTTGGACTTTTGTTGCTCTCCACGGTGCTTTCAGACTACTAGGTTTCATGTTACGTCAAT 1700 Query 159725 TTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCT 159783 || || |||||| ||| ||| | |||||||| ||||| || || ||| ||||||| Sbjct 1701 TTAAACCTGCTCGCTCT-GTTCAATTGCGTCCTTATAATGCAATAGCATTCCCTGGTCCA 1759 Query 159784 ATTGCTGTTTTTGT 159797 || || ||| ||| Sbjct 1760 ATCACTCTTTCTGT 1773 >seq175372 Length=687 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 159665 TTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAAT 159724 ||| | | |||||||||||||| ||||| ||| || ||||||||||| |||| |||| Sbjct 565 TTTCGACTTTTGTTGCTCTCCATGGTGCTTTCAGACTATTAGGTTTTATGTTACGTCAAT 506 Query 159725 TTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGC--TATTGCGTTCTCTGGTC 159781 ||||| ||||||| ||| ||| | |||||||| ||||| ||| | ||| |||||| Sbjct 505 TTGAACTTGCTCGCTCT-GTTCAATTGCGTCCTTATAATGCAATATAGAATTCCCTGGTC 447 Query 159782 CTATTGCTGTTTTTGT 159797 | || || ||| ||| Sbjct 446 CAATCACTCTTTCTGT 431 >seq170570 Length=388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 159827 AGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGT 159886 |||||| || ||||||| ||| |||| || |||| | || ||| | ||| | || | Sbjct 267 AGTCTTG-TGATTCTTTGAGCCTCGTTTTGGTGTAGTGACGATATTTCGGTTCATCTTTT 209 Query 159887 TCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 159946 | | || || | | || |||| | |||||||| |||||||||| |||| ||||| Sbjct 208 TTTTCCAAGGGTCTTATAATTGGATATTAAACCCCTTTCATATGATGG-AGTTTCTGGTG 150 Query 159947 TACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTG 160006 || | ||| | | | ||||| || |||||||||| |||||| || || || |||| Sbjct 149 TATTTCGTGCTGTTTTACTATGTGCTATTCATGGTGCTATTGTAGAAAATACTTTATTTG 90 Query 160007 AAGATGGAGA 160016 ||||||| || Sbjct 89 AAGATGGTGA 80 >seq83019 Length=2865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 ||||| ||||| |||| ||||| | ||| | || | ||| || ||||| |||||| Sbjct 681 TACATCATAGACTCTGCCGAAGATACCGGAATGGAGCTACCCTACTCATGTCGGGCTGGT 622 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 ||||| ||| | |||||||| | | || || | ||||||||| ||| ||| Sbjct 621 GCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGGCTCCGTTGACCAATCAGATGGATCA 562 Query 158964 TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACT 159023 ||| | |||||| | ||||| | |||| ||| | ||||| || || | ||||| || Sbjct 561 TTCCTTGATGATAAGCAGATGGAGAAAGGTTTTGTGCTTACATGCGTTGCATATCCTACA 502 Query 159024 TCTGATTGTGT 159034 || |||||||| Sbjct 501 TCGGATTGTGT 491 >seq93305 Length=279 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 159827 AGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC---CTGT 159883 |||||| |||||| ||| ||||||| || ||| || || ||| | ||| || | Sbjct 264 AGTCTTGTTGGTTCCTTGAGCCTAGTTATGG--TAGTGGCGATATTTTGGTTCATCCTTT 207 Query 159884 TGTTCCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGC 159941 | || ||| | ||| | | || ||||| | |||||||| ||||||||||||||||| Sbjct 206 TTTTTTTTCCAATGGTCTT-ATAAGTGGACTTTGAACCCCTTTCATATGATGGGAGTTGC 148 Query 159942 TGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATT 160001 || || | || | || ||| | ||||| | ||||| |||||| |||| || | || Sbjct 147 CTGTGTATTGGGCGCTGCTCTGCTATGTGC-TTTCATGGCGCTACTATAGAAAATATTTT 89 Query 160002 GTTTGAAGATGGAGA 160016 ||||||||||| || Sbjct 88 ATTTGAAGATGGTGA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571315758153600