Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq195423 592 2e-164 seq9524 114 2e-20 seq98625 98.7 1e-15 seq29272 95.1 1e-14 >seq195423 Length=63734 Score = 592 bits (656), Expect = 2e-164 Identities = 725/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| ||||| || | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | |||||||| ||||| |||||||| || ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||| || ||||| ||||||||| || ||||| || |||||||| |||| Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 ||| ||| | |||| || |||||||||| ||| ||||| | ||||| || || || Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 ||||||||| ||||| | |||| |||| ||||| || ||||||||||| || ||||| || Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 ||||||||||| || || || |||||||| || || || || |||||||| ||||| || Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| | || | || || || |||| ||| || || || Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||||| ||||| ||||| || || || ||||| || || |||||||| ||||| Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 || |||||||||||||||||| |||||||| || ||||| | || |||||||| || Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||||||||| || ||||||||||| || | || | ||||| ||||| || || Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 | | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | || || Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 |||||| || | | || ||||| || || |||||||| ||||| || || || || Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659 Query 181940 GCACAACTTCCCGCTTGATCTTGCAGC 181966 || |||||||| || || || || || Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGC 632 Score = 547 bits (606), Expect = 8e-151 Identities = 731/1008 (73%), Gaps = 10/1008 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| || || || ||||| ||||||||||| || | || Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 182549 |||| ||||| || | || ||||||| | ||||| ||| ||||| | || || || Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCA 36140 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || ||||| |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 36141 GTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 36200 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || || |||| || ||||| ||| | || || || |||| ||| || ||||| ||| Sbjct 36201 CAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACAC 36260 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 182728 ||||| |||| || || ||||||||| | | |||||||||||||||||| ||| || Sbjct 36261 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTG-TTCA 36319 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | ||||||| ||||| || || || |||| ||| |||||||| || || ||| || Sbjct 36320 ATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 36379 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| | || ||||| |||||| || ||||| |||||||| ||||| Sbjct 36380 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 36439 Query 182849 GATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTT 182905 ||| || | | |||| || |||| ||||||| || || |||||| | |||||||| Sbjct 36440 GATATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCCTT 36496 Query 182906 CCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGT 182965 ||||||||||||||||| ||| || |||| | || ||||| |||| || ||||| | Sbjct 36497 TCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGC 36556 Query 182966 CACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGA 183025 || ||||| ||||| || | ||||||||| || ||||||||||| || || | Sbjct 36557 TACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAA 36616 Query 183026 TTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAAT 183085 | || || | || || |||||||||||||| || || || || |||||||| ||||| Sbjct 36617 CCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAAT 36676 Query 183086 CTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGT 183145 ||| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 36677 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 36736 Query 183146 CATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTA 183205 | ||| | ||| | | || |||| | | || || || || || || |||||||| Sbjct 36737 AACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTA 36796 Query 183206 TGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACAC 183265 ||| || || || || || | ||||| ||||||||||| || ||||| |||||||| Sbjct 36797 TGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 36856 Query 183266 AAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACA 183325 ||| || || ||| | || || || | ||||||||| |||| || ||||| || || Sbjct 36857 AAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 36916 Query 183326 TGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||||||| | || |||||||| || |||||||| | || ||||| || Sbjct 36917 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 >seq9524 Length=8324 Score = 114 bits (126), Expect = 2e-20 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 181465 GTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCC 181524 |||| ||||||| |||| |||| ||||| || ||||||| |||||| ||||| | |||| Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838 Query 181525 ACATGTTGGGTGTCGCAGGTGTATTTGGT--GGTTCACTGTTCAGTGCAATGCACGGTTC 181582 ||||||| || | ||| || |||| | || | |||| | |||||||||| Sbjct 837 ACATGTT--ATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCACGGTTA 783 Query 181583 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 181642 ||||| || ||| | |||| || || || |||| ||| || | || | | || Sbjct 782 CTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAGATA 723 Query 181643 CAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCG 181702 || || || | ||| || || || ||| | || || | || || | ||| ||||| Sbjct 722 CAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGGCTT 663 Query 181703 CTTGAT-CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAG 181761 ||||| ||||| ||||||| ||| ||| || | ||| | || |||||||| | | Sbjct 662 ATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAGATG 603 Query 181762 CATGGCCTGTAG 181773 | |||||||||| Sbjct 602 CTTGGCCTGTAG 591 >seq98625 Length=4366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 179468 AGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTT 179527 |||| || ||||| ||||| || || ||||| |||||||| || || | || || | Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683 Query 179528 GTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAA 179587 | || ||||||||||| || | |||||||| || || | | ||| || ||||| || Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623 Query 179588 GCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTAT 179647 ||| || || | ||||| ||||||||||| | || | | | ||||||||| | | Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563 Query 179648 CTTATCCTACTAGTGATTGCGT 179669 | || || ||| |||||||| Sbjct 1562 CATACCCGACTTCAGATTGCGT 1541 >seq29272 Length=1881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529 ||||| || ||| ||||| |||||||||||||| || | ||| | ||||| || Sbjct 1564 GATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC 1505 Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGC 179589 | ||||| ||||| || || ||| |||| ||| | | | |||| | ||||| || Sbjct 1504 AGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCG 1445 Query 179590 GATCAATCGTTTTTGGATGACGATCAAA-TGGAGTCGGGATTTATTCTGACTTGCGTATC 179648 || ||| ||| ||||||| ||||||| ||||| || ||| |||| ||||| | | Sbjct 1444 GAGCAAAGCTTTCTGGATGATGATCAAATTGGAG-AAGGTTTTGTTCTCACTTGTGCTGC 1386 Query 179649 TTATCCTACTAGTGAT 179664 |||||| || |||||| Sbjct 1385 TTATCCAACAAGTGAT 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612785363472640