Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 592 2e-164
seq9524 114 2e-20
seq98625 98.7 1e-15
seq29272 95.1 1e-14
>seq195423
Length=63734
Score = 592 bits (656), Expect = 2e-164
Identities = 725/987 (73%), Gaps = 2/987 (0%)
Strand=Plus/Minus
Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040
||||| | ||| ||||| || | |||||||| || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099
||||| || ||| | ||| | |||||| ||||| || || |||||||| | ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159
|| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219
|| || |||||||| || |||| |||| || || ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279
|||||||| ||||| ||||||| ||| | || || || ||||||| | || | ||
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339
| |||||| | | || | | |||||||| ||||| |||||||| || |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399
| |||||||| || ||||| ||||||||| || ||||| || |||||||| ||||
Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199
Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459
||| ||| | |||| || |||||||||| ||| ||||| | ||||| || || ||
Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139
Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519
||||||||| ||||| | |||| |||| ||||| || ||||||||||| || ||||| ||
Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079
Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579
||||||||||| || || || |||||||| || || || || |||||||| ||||| ||
Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019
Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639
||| ||||| || ||| | || | || || || |||| ||| || || ||
Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959
Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699
||||| ||||| ||||| ||||| || || || ||||| || || |||||||| |||||
Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899
Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759
|| |||||||||||||||||| |||||||| || ||||| | || |||||||| ||
Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839
Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819
|| ||||||||||| || ||||||||||| || | || | ||||| ||||| || ||
Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779
Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879
| | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | || ||
Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719
Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939
|||||| || | | || ||||| || || |||||||| ||||| || || || ||
Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659
Query 181940 GCACAACTTCCCGCTTGATCTTGCAGC 181966
|| |||||||| || || || || ||
Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGC 632
Score = 547 bits (606), Expect = 8e-151
Identities = 731/1008 (73%), Gaps = 10/1008 (1%)
Strand=Plus/Plus
Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430
|||| |||||| | |||| || || || ||||| ||||||||||| || | ||
Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021
Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081
Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 182549
|||| ||||| || | || ||||||| | ||||| ||| ||||| | || || ||
Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCA 36140
Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609
|| ||||| |||||| || | | | |||||| | | |||| ||||||||||| |
Sbjct 36141 GTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 36200
Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669
|| || |||| || ||||| ||| | || || || |||| ||| || ||||| |||
Sbjct 36201 CAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACAC 36260
Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 182728
||||| |||| || || ||||||||| | | |||||||||||||||||| ||| ||
Sbjct 36261 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTG-TTCA 36319
Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788
| | ||||||| ||||| || || || |||| ||| |||||||| || || ||| ||
Sbjct 36320 ATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 36379
Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848
||| || ||||| | || ||||| |||||| || ||||| |||||||| |||||
Sbjct 36380 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 36439
Query 182849 GATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTT 182905
||| || | | |||| || |||| ||||||| || || |||||| | ||||||||
Sbjct 36440 GATATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCCTT 36496
Query 182906 CCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGT 182965
||||||||||||||||| ||| || |||| | || ||||| |||| || ||||| |
Sbjct 36497 TCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGC 36556
Query 182966 CACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGA 183025
|| ||||| ||||| || | ||||||||| || ||||||||||| || || |
Sbjct 36557 TACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAA 36616
Query 183026 TTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAAT 183085
| || || | || || |||||||||||||| || || || || |||||||| |||||
Sbjct 36617 CCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAAT 36676
Query 183086 CTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGT 183145
||| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || ||
Sbjct 36677 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 36736
Query 183146 CATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTA 183205
| ||| | ||| | | || |||| | | || || || || || || ||||||||
Sbjct 36737 AACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTA 36796
Query 183206 TGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACAC 183265
||| || || || || || | ||||| ||||||||||| || ||||| ||||||||
Sbjct 36797 TGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 36856
Query 183266 AAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACA 183325
||| || || ||| | || || || | ||||||||| |||| || ||||| || ||
Sbjct 36857 AAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 36916
Query 183326 TGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373
||||||| | || |||||||| || |||||||| | || ||||| ||
Sbjct 36917 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964
>seq9524
Length=8324
Score = 114 bits (126), Expect = 2e-20
Identities = 215/312 (69%), Gaps = 8/312 (3%)
Strand=Plus/Minus
Query 181465 GTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCC 181524
|||| ||||||| |||| |||| ||||| || ||||||| |||||| ||||| | ||||
Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838
Query 181525 ACATGTTGGGTGTCGCAGGTGTATTTGGT--GGTTCACTGTTCAGTGCAATGCACGGTTC 181582
||||||| || | ||| || |||| | || | |||| | ||||||||||
Sbjct 837 ACATGTT--ATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCACGGTTA 783
Query 181583 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 181642
||||| || ||| | |||| || || || |||| ||| || | || | | ||
Sbjct 782 CTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAGATA 723
Query 181643 CAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCG 181702
|| || || | ||| || || || ||| | || || | || || | ||| |||||
Sbjct 722 CAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGGCTT 663
Query 181703 CTTGAT-CTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAG 181761
||||| ||||| ||||||| ||| ||| || | ||| | || |||||||| | |
Sbjct 662 ATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAGATG 603
Query 181762 CATGGCCTGTAG 181773
| ||||||||||
Sbjct 602 CTTGGCCTGTAG 591
>seq98625
Length=4366
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 179468 AGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTT 179527
|||| || ||||| ||||| || || ||||| |||||||| || || | || || |
Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683
Query 179528 GTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAA 179587
| || ||||||||||| || | |||||||| || || | | ||| || ||||| ||
Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623
Query 179588 GCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTAT 179647
||| || || | ||||| ||||||||||| | || | | | ||||||||| | |
Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563
Query 179648 CTTATCCTACTAGTGATTGCGT 179669
| || || ||| ||||||||
Sbjct 1562 CATACCCGACTTCAGATTGCGT 1541
>seq29272
Length=1881
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529
||||| || ||| ||||| |||||||||||||| || | ||| | ||||| ||
Sbjct 1564 GATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC 1505
Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGC 179589
| ||||| ||||| || || ||| |||| ||| | | | |||| | ||||| ||
Sbjct 1504 AGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCG 1445
Query 179590 GATCAATCGTTTTTGGATGACGATCAAA-TGGAGTCGGGATTTATTCTGACTTGCGTATC 179648
|| ||| ||| ||||||| ||||||| ||||| || ||| |||| ||||| | |
Sbjct 1444 GAGCAAAGCTTTCTGGATGATGATCAAATTGGAG-AAGGTTTTGTTCTCACTTGTGCTGC 1386
Query 179649 TTATCCTACTAGTGAT 179664
|||||| || ||||||
Sbjct 1385 TTATCCAACAAGTGAT 1370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612785363472640
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