Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 578 5e-160
seq98625 113 5e-20
seq29272 104 3e-17
seq29277 91.5 2e-13
>seq195423
Length=63734
Score = 578 bits (640), Expect = 5e-160
Identities = 722/987 (73%), Gaps = 2/987 (0%)
Strand=Plus/Minus
Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908
||||| | ||| ||||| || | |||||||| || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967
||||| || ||| | ||| | |||||| ||||| || || |||||||| | ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027
|| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087
|| || |||||||| || |||| |||| || || ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147
|||||||| ||||| ||||||| ||| | || || || ||||||| | || | ||
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207
| |||||| | ||||| | | |||||||| ||||||||||||||| | |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267
| | |||||||| || ||||| ||| ||||| || ||||| || |||||||| | ||
Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199
Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327
|| ||| || |||| || |||||||||| |||||||| | ||||| || || ||
Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139
Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387
||||||||| ||||| | |||| |||| ||||| || || |||||||| || ||||||||
Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079
Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447
||||||||||| || || || ||||||||||| || || || |||||||| ||||| ||
Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019
Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507
||| ||||| || ||| | | | ||||| || |||| ||||| || ||
Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959
Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567
||| | ||||| ||||| ||||| || || || ||||| || || || || || || ||
Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899
Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627
|| |||||||||||||||||| |||||||| || ||||| | || |||||||| ||
Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839
Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687
|| ||||||||||| || ||||||||||| || | || | ||||| ||||| || ||
Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779
Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747
| | ||||| ||||| |||||||| || | | || | ||||| ||||| | || ||
Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719
Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807
||||| || | | || ||||| || || |||||||| ||||| || || || ||
Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659
Query 178808 GCACAACTTCCCGCTTGATCTTGCAGC 178834
|| |||||||| || || || || ||
Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGC 632
Score = 491 bits (544), Expect = 5e-134
Identities = 706/990 (71%), Gaps = 4/990 (0%)
Strand=Plus/Plus
Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292
|||| |||||| | |||| || || || ||||| ||||||||||| || | ||
Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021
Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081
Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCT 179411
|||| ||||| || | || ||||||||| | || || ||| ||||| | || || ||
Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCA 36140
Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471
|| ||||| |||||| || | | | |||||| | | |||| ||||||||||| |
Sbjct 36141 GTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 36200
Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531
|| || |||| || ||||| ||| | || || || |||| ||| || ||||| |||
Sbjct 36201 CAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACAC 36260
Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590
||||| |||| || || ||||||||| | | |||||||||||||||||| ||| |
Sbjct 36261 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAA 36320
Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650
| | ||||||| ||||| || || || |||| ||| |||||||| || || ||| ||
Sbjct 36321 TTGC-GACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 36379
Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710
||| || ||||| | || ||||| |||||| || ||||| |||||||| |||||
Sbjct 36380 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 36439
Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770
||| || | ||| | || || | || || || || || ||||| | |||||||| ||
Sbjct 36440 GATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCA 36499
Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830
||||||||||||||| ||| || | || | || ||||| |||| || ||||| | |||
Sbjct 36500 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTAC 36559
Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890
||||| ||||| || | ||||||||| || ||||| || || || ||| | |
Sbjct 36560 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCC 36619
Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950
|| || | ||||| || ||||| |||||||| || |||||||| ||||| || |||||
Sbjct 36620 AACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTT 36679
Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010
|| |||| ||||| || || || ||| | ||||| || ||||| ||||| || || |
Sbjct 36680 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 36739
Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070
||| |||||| || |||| | | || || || || ||||| |||||||| ||
Sbjct 36740 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGA 36799
Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130
||||| ||||| ||| | ||||| |||||||| || |||||||| |||||||| ||
Sbjct 36800 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAA 36859
Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190
|| |||||| | || || || | ||||| ||| |||| | ||||| || |||||
Sbjct 36860 AAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 36919
Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220
| ||||||| || || ||||| ||
Sbjct 36920 AAACCTTATATTCCCTGAGGAGGTTCTACC 36949
>seq98625
Length=4366
Score = 113 bits (124), Expect = 5e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 176335 AGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTT 176394
|||| || ||||| ||||| || || ||||| |||||||| || || | || || |
Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683
Query 176395 GTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGA 176454
| || ||||||||||| || | |||||||| || | | | |||||| ||||| |||
Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623
Query 176455 GTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTAT 176514
||| || ||||| ||||| ||||||| || |||||| | | ||||||||| | |
Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563
Query 176515 CTTATCCTACTAGTGATTGCGT 176536
| || || ||| ||||||||
Sbjct 1562 CATACCCGACTTCAGATTGCGT 1541
>seq29272
Length=1881
Score = 104 bits (114), Expect = 3e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396
||||| || ||| ||||| |||||||||||||| || | ||| | ||||| ||
Sbjct 1564 GATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC 1505
Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456
| ||||| ||||| || || ||| |||| ||| | | | ||| | ||||| |||
Sbjct 1504 AGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCG 1445
Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516
|| || || ||||||||||||||||||| | |||||| |||| ||||| | ||
Sbjct 1444 GAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCT 1385
Query 176517 TATCCTACTAGTGAT 176531
||||| || ||||||
Sbjct 1384 TATCCAACAAGTGAT 1370
>seq29277
Length=523
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 176346 TATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGT 176405
||||| ||||| || |||||||| || || | ||| || || || || | ||||||
Sbjct 302 TATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGT 243
Query 176406 GCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATC-AGTC 176464
|||| || |||||||||| ||| | | ||| |||||| ||| ||| | |
Sbjct 242 TCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCAGATGGAAGC 183
Query 176465 TTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524
|||| || | ||||||||||| || | |||| | |||| ||||| || ||||||||||
Sbjct 182 TTTCTTG-AGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGCTTATCCTAC 124
Query 176525 TAGTGAT 176531
||||||
Sbjct 123 AAGTGAT 117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 604203024781440
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