Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq195423 578 5e-160 seq98625 113 5e-20 seq29272 104 3e-17 seq29277 91.5 2e-13 >seq195423 Length=63734 Score = 578 bits (640), Expect = 5e-160 Identities = 722/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| ||||| || | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | |||||||| ||||||||||||||| | ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || |||||||| | || Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| || |||||||||| |||||||| | ||||| || || || Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 ||||||||| ||||| | |||| |||| ||||| || || |||||||| || |||||||| Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 ||||||||||| || || || ||||||||||| || || || |||||||| ||||| || Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | | | ||||| || |||| ||||| || || Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | ||||| ||||| ||||| || || || ||||| || || || || || || || Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || |||||||||||||||||| |||||||| || ||||| | || |||||||| || Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || ||||||||||| || | || | ||||| ||||| || || Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 | | ||||| ||||| |||||||| || | | || | ||||| ||||| | || || Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | | || ||||| || || |||||||| ||||| || || || || Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGC 178834 || |||||||| || || || || || Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGC 632 Score = 491 bits (544), Expect = 5e-134 Identities = 706/990 (71%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| ||||||||||| || | || Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCT 179411 |||| ||||| || | || ||||||||| | || || ||| ||||| | || || || Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCA 36140 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || ||||| |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 36141 GTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 36200 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || || |||| || ||||| ||| | || || || |||| ||| || ||||| ||| Sbjct 36201 CAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACAC 36260 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 ||||| |||| || || ||||||||| | | |||||||||||||||||| ||| | Sbjct 36261 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAA 36320 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||||| ||||| || || || |||| ||| |||||||| || || ||| || Sbjct 36321 TTGC-GACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 36379 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| | || ||||| |||||| || ||||| |||||||| ||||| Sbjct 36380 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 36439 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 ||| || | ||| | || || | || || || || || ||||| | |||||||| || Sbjct 36440 GATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCA 36499 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| ||| || | || | || ||||| |||| || ||||| | ||| Sbjct 36500 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTAC 36559 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 ||||| ||||| || | ||||||||| || ||||| || || || ||| | | Sbjct 36560 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCC 36619 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| || ||||| |||||||| || |||||||| ||||| || ||||| Sbjct 36620 AACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTT 36679 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 36680 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 36739 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| || |||| | | || || || || ||||| |||||||| || Sbjct 36740 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGA 36799 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||||| ||||| ||| | ||||| |||||||| || |||||||| |||||||| || Sbjct 36800 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAA 36859 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || |||||| | || || || | ||||| ||| |||| | ||||| || ||||| Sbjct 36860 AAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 36919 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | ||||||| || || ||||| || Sbjct 36920 AAACCTTATATTCCCTGAGGAGGTTCTACC 36949 >seq98625 Length=4366 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 176335 AGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTT 176394 |||| || ||||| ||||| || || ||||| |||||||| || || | || || | Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683 Query 176395 GTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGA 176454 | || ||||||||||| || | |||||||| || | | | |||||| ||||| ||| Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623 Query 176455 GTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTAT 176514 ||| || ||||| ||||| ||||||| || |||||| | | ||||||||| | | Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563 Query 176515 CTTATCCTACTAGTGATTGCGT 176536 | || || ||| |||||||| Sbjct 1562 CATACCCGACTTCAGATTGCGT 1541 >seq29272 Length=1881 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 ||||| || ||| ||||| |||||||||||||| || | ||| | ||||| || Sbjct 1564 GATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC 1505 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | ||||| ||||| || || ||| |||| ||| | | | ||| | ||||| ||| Sbjct 1504 AGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCG 1445 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 || || || ||||||||||||||||||| | |||||| |||| ||||| | || Sbjct 1444 GAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCT 1385 Query 176517 TATCCTACTAGTGAT 176531 ||||| || |||||| Sbjct 1384 TATCCAACAAGTGAT 1370 >seq29277 Length=523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 176346 TATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGT 176405 ||||| ||||| || |||||||| || || | ||| || || || || | |||||| Sbjct 302 TATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGT 243 Query 176406 GCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATC-AGTC 176464 |||| || |||||||||| ||| | | ||| |||||| ||| ||| | | Sbjct 242 TCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCAGATGGAAGC 183 Query 176465 TTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524 |||| || | ||||||||||| || | |||| | |||| ||||| || |||||||||| Sbjct 182 TTTCTTG-AGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGCTTATCCTAC 124 Query 176525 TAGTGAT 176531 |||||| Sbjct 123 AAGTGAT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604203024781440