Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq195423 598 5e-166 seq29272 82.4 8e-11 >seq195423 Length=63734 Score = 598 bits (662), Expect = 5e-166 Identities = 729/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || ||| | ||| | ||||| ||||| || || |||||||| | |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || || |||||||| || | || |||| || || ||| | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | || ||||| ||||| ||||||||| | ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || ||||| |||| Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | |||| || |||||||||| ||| || |||| ||||||||| || || Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| || | |||| |||||||||| || || |||||||||||||||||||| Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||||| ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || | || | | || | ||||| || |||| || || || | Sbjct 1018 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| ||||| |||||||| ||||||||||| || || || ||||| || | Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || |||||||||||||| ||| |||||||| || ||||| || || |||||||| | Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 ||||||| ||| | | || ||||| || |||||||||||||||||||| ||||| | Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCT 159365 | || |||||||| || ||||| |||||| Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 504 bits (558), Expect = 8e-138 Identities = 729/1021 (71%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||||||| | || || ||||| ||| | Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 36130 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 160136 || || ||||| ||||| ||| | | | | |||||| || || || || |||| Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTATGGG 36189 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 ||||||| || ||||| ||||| | ||| ||| | || || || |||| ||||| Sbjct 36190 GTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTG 36249 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || || || ||||| |||| ||||| || |||||| | ||||| |||||||| || | Sbjct 36250 TTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 36309 Query 160257 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT 160315 | ||| || | | || ||||| ||||| || || ||||||| ||| |||||||| ||| Sbjct 36310 GCTCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTT 36368 Query 160316 GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 160375 || |||||||| || || ||| | |||||||| ||||||| || || || ||| Sbjct 36369 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 36428 Query 160376 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTT 160435 || || || || || ||| ||||| | | || | ||||| ||||| || ||||| | Sbjct 36429 GGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTG 36488 Query 160436 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATC 160495 |||||||| ||||||||||||||||| ||| || | || | || ||||| ||||||| Sbjct 36489 AACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATT 36548 Query 160496 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 160555 ||||||| ||| ||||| || || | | ||||||||| || ||||| || || Sbjct 36549 CATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGT 36608 Query 160556 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160615 || ||| | | || || | ||||| || ||||| |||||||| || |||||||| ||| Sbjct 36609 GCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGG 36668 Query 160616 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160675 || || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 36669 TCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 36728 Query 160676 GTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 160735 || || || | ||| | |||| | |||| | | || || || || || || Sbjct 36729 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTA 36788 Query 160736 CGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACC 160795 |||||||| || ||||| || || || | ||||| |||||||| ||||||||||| Sbjct 36789 CGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 36848 Query 160796 TTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 160855 |||||||| || || || || | || || || | ||||| ||| | || || || Sbjct 36849 TTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGAT 36908 Query 160856 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 160915 || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 36909 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 36968 Query 160916 T 160916 | Sbjct 36969 T 36969 >seq29272 Length=1881 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 159549 ATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCT 159608 ||| | || |||||||| ||||| || | ||| |||||| ||||| | ||||| ||| Sbjct 1552 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 1493 Query 159609 TGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAAT-CTTT 159667 || | ||| |||| || ||| | || || |||||||| || ||| |||| Sbjct 1492 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 1433 Query 159668 CTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATC 159727 || ||| ||||||||| | | ||||| ||| |||||||||||| | || || ||| Sbjct 1432 CT-GGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAG 1374 Query 159728 AGACGTAACTAT 159739 || || ||||| Sbjct 1373 TGATGTTACTAT 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550826620951040