Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq195423 583 1e-161 seq98625 91.5 2e-13 seq29272 91.5 2e-13 >seq195423 Length=63734 Score = 583 bits (646), Expect = 1e-161 Identities = 702/949 (74%), Gaps = 4/949 (0%) Strand=Plus/Minus Query 178901 TTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATC 178959 |||||||||| ||||| ||||||| ||||| || | | |||||| ||||| || || Sbjct 1577 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATT 1519 Query 178960 GTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGT 179019 | || ||| | || || ||||| || ||||||||||| || |||||||| || |||| Sbjct 1518 ATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGA 1459 Query 179020 TCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATT 179079 || || | ||||||||||| || || |||||||| || | || | ||| || || Sbjct 1458 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATA 1399 Query 179080 GGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGT 179139 ||| | || || ||||| || |||||||| ||||| | ||||| ||| | || || || Sbjct 1398 GGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGC 1339 Query 179140 GGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGT 179199 ||||||| | || | || | |||||| | | || | | || ||||| ||| Sbjct 1338 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 1279 Query 179200 GAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCA 179259 |||||||||||| || |||||| ||||||||||| ||||| ||||||||| || || Sbjct 1278 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1219 Query 179260 CCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 179319 || || || || |||| ||| || ||| | |||| || |||||||||| ||| ||| Sbjct 1218 CCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCT 1159 Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379 |||| ||||||||| || |||||||||||||| || | |||| |||||||||| || || Sbjct 1158 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAG 1099 Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 179439 |||||||||||||||||||| ||||| ||| | || || ||||| |||||||| || || Sbjct 1098 CACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 1039 Query 179440 CTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGA 179498 || ||| ||||||||| || | || || | || | ||| || | ||||| || || Sbjct 1038 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGA 980 Query 179499 GACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGT 179558 | || || || ||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 979 AAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 920 Query 179559 CGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACG 179618 || || || || || || || || ||||||||||||||||| || ||||| || || Sbjct 919 AGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 860 Query 179619 CTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGG 179678 ||||| || |||||||| ||||| ||||| || || || ||||||||||||||| | || Sbjct 859 TTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 800 Query 179679 CGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGG 179738 | || ||||| |||||| | || |||||||| |||||||| || | |||| | Sbjct 799 TATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 740 Query 179739 TCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGA 179798 |||||| ||||| |||| || ||||| || | | || ||||| | |||||||| Sbjct 739 TCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGA 680 Query 179799 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 179847 |||||||||||| ||||| || || |||||||| || ||||| |||||| Sbjct 679 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 522 bits (578), Expect = 3e-143 Identities = 706/981 (72%), Gaps = 2/981 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || |||||| | ||||| || ||||| ||||| || | || Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || ||||| |||||| | Sbjct 36102 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAG 36160 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | |||||| | | |||| ||||||||||| | || || |||| || || Sbjct 36161 TTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTG 36220 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || || |||| ||| || ||||| |||||||| |||| ||||| || Sbjct 36221 GTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAGG 36280 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 || ||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 36281 TTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAATTGCGACCTTATAATGCAAT 36340 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||| ||| || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 36341 AGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCA 36400 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 ||| ||||||||||||| || |||||| ||||| || || ||| ||||| | || || Sbjct 36401 GTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTT 36460 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || ||||| | |||||||| ||||||||||||||||| ||| | Sbjct 36461 TTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGT 36520 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 | | || | || |||||| || || ||||||| || || || || || | | ||| Sbjct 36521 ATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGA 36580 Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709 |||||| || |||||||| || || ||| | ||||||||| || ||||| || Sbjct 36581 AGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTA 36640 Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 36641 TTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAA 36700 Query 180770 GCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTAT 180829 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || | Sbjct 36701 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 36760 Query 180830 TGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAG 180889 ||| | | || || || || ||||| |||||||| || ||||| || || ||| | Sbjct 36761 TGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCG 36820 Query 180890 AGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGG 180949 ||||| ||||||||||| || ||||| |||||||| || || || || || || || || Sbjct 36821 TGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGG 36880 Query 180950 ACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGA 181009 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 36881 TATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 36940 Query 181010 AGTTCTACCAAGAGGTAACGC 181030 |||||||| | || ||||| Sbjct 36941 GGTTCTACCCCGTGGAAACGC 36961 >seq98625 Length=4366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177381 GACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGC 177440 || || |||||||||||||| || ||||| |||||||| || || | || || ||| Sbjct 1740 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 1681 Query 177441 CGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGC 177500 |||||||||||||| || | |||||||| || | | | |||| || || || Sbjct 1680 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 1621 Query 177501 GATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCA 177560 ||| || ||| | ||||| ||||||||||| | || | | | ||||| || | ||| Sbjct 1620 GATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 1561 Query 177561 TATCCCAC 177568 || || || Sbjct 1560 TACCCGAC 1553 >seq29272 Length=1881 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 177393 ATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGTGCT 177452 || || || || ||||||||||| || ||||| || ||||||||| | ||||| ||| Sbjct 1552 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 1493 Query 177453 TGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCGTTC 177512 || || |||||| |||| ||| ||| | ||| | || || || || ||| || Sbjct 1492 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 1433 Query 177513 TTGGATGACGATCAAA-TGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCACCAG 177571 ||||||| ||||||| ||||| ||| ||| |||| || |||| | ||||| || || Sbjct 1432 CTGGATGATGATCAAATTGGAG-AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAG 1374 Query 177572 CGAT 177575 ||| Sbjct 1373 TGAT 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608510146429440