Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2110 134 2e-26 seq80422 123 3e-23 seq38305 118 1e-21 >seq2110 Length=919 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 741 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 682 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||||||| |||| ||||| || || || Sbjct 681 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 622 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 621 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 562 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 561 CCTTCAATACTATCATCTTTCATG 538 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | ||| |||||||| || || |||||| || ||| | || || | Sbjct 376 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 317 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| || || || || || ||||| || | || || | ||||||| Sbjct 316 TATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCATCAAC 257 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| || |||| |||||| ||| | | ||||| ||||| || | ||||| Sbjct 256 ATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAGG 197 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 196 GTTTTGAAGCCAAAATA 180 >seq80422 Length=4294 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||||||| || ||||||||| ||| || | || || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||| ||| |||||| || || ||||| || |||||||| || | || | |||||| Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGAAACCCTCATCAA 1325 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 |||||||||||||| |||||| Sbjct 1324 CATATGCTGAGGTCTTTCTAC 1304 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 1773 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 1714 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| |||||||||||| |||| ||||| || || || Sbjct 1713 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 1654 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 1653 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 1594 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 1593 CCTTCGATACTATCATCTTTCAT 1571 >seq38305 Length=3123 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | |||| ||||||| |||| | ||| |||||||| | ||| || Sbjct 2309 TCCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCC 2250 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || |||||||||||| || ||||| ||| || || |||||| ||| || Sbjct 2249 ATTGGAAGATCCATTTGTTCCATGGATGTAACTACCTGAGGCACGGATATTATGAATGGA 2190 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 2189 GAGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTCCTTCAGGGTATCATATAT 2130 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| |||||| ||||| | |||||| |||||| Sbjct 2129 GCCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684861056176320