Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq89547 132 4e-26 >seq89547 Length=5293 Score = 132 bits (146), Expect = 4e-26 Identities = 384/583 (66%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || ||||| |||| | || ||| |||||||||| ||||| | ||||| |||| Sbjct 3415 TGTTCCCGATTCAGTATCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 3356 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || ||||||||| | | |||| || || || ||| || ||| | Sbjct 3355 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGC-CACTGGGAGGCCCTAACCGCT 3297 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || || || || | | || | || || ||||| || |||||| || ||| Sbjct 3296 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCGTC 3237 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || || | | | |||| | || || || | | || || || || Sbjct 3236 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 3177 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || || || ||||| || || || || || ||||||||| || || |||| Sbjct 3176 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAA 3117 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || ||||||||||| |||| ||| | || | ||| | || || || || || || Sbjct 3116 ACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCC 3057 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 |||| || | ||||| ||||| | || ||||| | || |||||| Sbjct 3056 TGCGTCGCAA-AGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTTGC 2998 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 || || | |||||||||| ||||| || |||||||| ||||| | |||||| Sbjct 2997 GGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG- 2939 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | ||||||||| | || || || || || ||||| || |||||||| ||||||||||| | Sbjct 2938 CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGTTGA 2879 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | || ||||| || | || |||||||| || ||| |||| Sbjct 2878 TCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCTGTT 2836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396300765320440