Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq68514 116 3e-21 seq68470 107 2e-18 seq43799 102 7e-17 seq43779 93.3 4e-14 seq13742 89.7 4e-13 seq43778 84.2 2e-11 >seq68514 Length=8688 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || ||||||||||| ||||| ||| || |||| |||||||||| || Sbjct 8192 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 8133 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || ||||| | ||||||||||| || |||||||| | ||||| || || |||||| Sbjct 8132 CTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 8073 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || ||||| || || || | ||||| || Sbjct 8072 GGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 8013 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 8012 GAGGGTTTTCACAAATATCTGCAT 7989 >seq68470 Length=2690 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | ||| | || || || || || || ||||| ||| Sbjct 435 TGCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGG 376 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| ||||||||||| || ||| | || || | ||| || ||||| | Sbjct 375 CCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGG 316 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| || | | | || | ||||| | | || | Sbjct 315 GAATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 256 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| |||| |||||| ||||| |||||||| ||||| ||||| Sbjct 255 CTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| ||||| ||| || | |||| | ||||| | ||| |||||| Sbjct 859 GTTGACTCTTTTTGAATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAACTGCTTACCG 800 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | || || |||||||| | |||||||| || ||||||| || Sbjct 799 GCGAAGATCAATCTTTGCTGGTCCGGCGGGATCCCCTCTTTGTCCTGGATCTTGGCCTTG 740 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || || || ||||| || | || || || || ||| Sbjct 739 ACGTTATCAATCGTATCCGAACTCTCCACCTCCAGAGTGATCGTCTTCCCAGTTAGGGTT 680 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 679 TTGACGAAGATCTGCATA 662 >seq43799 Length=2218 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || || || || ||||| ||||| || || |||| | || || Sbjct 1009 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 1067 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 1068 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 1127 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 1128 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 1187 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||||||||||||||| Sbjct 1188 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 1217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | || | ||||| Sbjct 325 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCA 384 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| ||||| | || | | ||||||||| || || | ||||| || || | Sbjct 385 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 444 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 445 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 504 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 505 CCAGTCAGGGTTTTCACAAAAATCTGCAT 533 >seq43779 Length=2831 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || || ||||| | |||| | || ||| Sbjct 211 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 270 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||||||||| | ||||| | || || || || || | || || ||||| | Sbjct 271 AGCTGTTTACCGGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 330 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||| || || || ||||| | ||| Sbjct 331 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 390 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 391 CCGGTGAGAGTCTTCACAAAGATTTGCAT 419 >seq13742 Length=406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || ||| Sbjct 170 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 229 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || ||||| || | || || || || |||||| || Sbjct 230 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTG 289 Query 27171 AGGGTTTCTACAGTGTCTGTGGCT-TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | ||| || || || ||||| || | ||||| |||| ||| Sbjct 290 ACATTGTCGATCGTGTC-GAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGT 348 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||| ||||| Sbjct 349 TTTCACAAAGATCTGCAT 366 >seq43778 Length=4696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || || || ||| | | ||||| | || || Sbjct 3979 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTCA 4038 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | || || | ||| ||||| || || | || || || || | Sbjct 4039 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGG 4098 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | || || | | |||||| || || ||||| | ||| Sbjct 4099 ATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTATGGTTTTT 4158 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 4159 CCGGTGAGAGTCTTCACAAAGATTTGCAT 4187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423699297358656