Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 116 3e-21
seq68470 107 2e-18
seq43799 102 7e-17
seq43779 93.3 4e-14
seq13742 89.7 4e-13
seq43778 84.2 2e-11
>seq68514
Length=8688
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103
||| || || || ||||||||||| ||||| ||| || |||| |||||||||| ||
Sbjct 8192 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 8133
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
|| ||||| | ||||||||||| || |||||||| | ||||| || || ||||||
Sbjct 8132 CTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 8073
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| || | | | || | ||||| | | || ||||| || || || | ||||| ||
Sbjct 8072 GGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 8013
Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||||||||| || |||||
Sbjct 8012 GAGGGTTTTCACAAATATCTGCAT 7989
>seq68470
Length=2690
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||||||||| | || | || | ||| | || || || || || || ||||| |||
Sbjct 435 TGCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGG 376
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| |||| ||||||||||| || ||| | || || | ||| || ||||| |
Sbjct 375 CCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGG 316
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || ||||| || | | | || | ||||| | | || |
Sbjct 315 GAATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 256
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| ||||| |||| |||||| ||||| |||||||| ||||| |||||
Sbjct 255 CTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||||||||| ||||| ||| || | |||| | ||||| | ||| ||||||
Sbjct 859 GTTGACTCTTTTTGAATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAACTGCTTACCG 800
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | | || || |||||||| | |||||||| || ||||||| ||
Sbjct 799 GCGAAGATCAATCTTTGCTGGTCCGGCGGGATCCCCTCTTTGTCCTGGATCTTGGCCTTG 740
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | || || | || || || ||||| || | || || || || |||
Sbjct 739 ACGTTATCAATCGTATCCGAACTCTCCACCTCCAGAGTGATCGTCTTCCCAGTTAGGGTT 680
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||| ||||||
Sbjct 679 TTGACGAAGATCTGCATA 662
>seq43799
Length=2218
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097
||||| || | || || || || || ||||| ||||| || || |||| | || ||
Sbjct 1009 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 1067
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
|||||||||||| || | || || | ||| ||||| || || | || || || ||
Sbjct 1068 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 1127
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||||||| ||| | | || | ||||| | | |||||| || || ||||| | ||
Sbjct 1128 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 1187
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || |||||||||||||||||||||||
Sbjct 1188 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 1217
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || || || || || |||||||| | | || | |||||
Sbjct 325 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCA 384
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| ||||| ||||| | || | | ||||||||| || || | ||||| || || |
Sbjct 385 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 444
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | ||||| | | |||||| || | |||||||| ||
Sbjct 445 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 504
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| ||||||||||| || |||||
Sbjct 505 CCAGTCAGGGTTTTCACAAAAATCTGCAT 533
>seq43779
Length=2831
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || || ||||| | |||| | || |||
Sbjct 211 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 270
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|||||||||||||| | ||||| | || || || || || | || || ||||| |
Sbjct 271 AGCTGTTTACCGGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 330
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| ||| | | | || | ||||| | | ||| || || || ||||| | |||
Sbjct 331 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 390
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || ||||| |||||||||||||||||
Sbjct 391 CCGGTGAGAGTCTTCACAAAGATTTGCAT 419
>seq13742
Length=406
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||| || || | ||||| |||| |||||||| || |||
Sbjct 170 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 229
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || ||||| || ||||| || | || || || || |||||| ||
Sbjct 230 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTG 289
Query 27171 AGGGTTTCTACAGTGTCTGTGGCT-TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | ||||| | ||| || || || ||||| || | ||||| |||| |||
Sbjct 290 ACATTGTCGATCGTGTC-GAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGT 348
Query 27230 TTTCACAAAGATTTGCAT 27247
|||||||||||| |||||
Sbjct 349 TTTCACAAAGATCTGCAT 366
>seq43778
Length=4696
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || || || ||| | | ||||| | || ||
Sbjct 3979 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTCA 4038
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||||||||| || | || || | ||| ||||| || || | || || || || |
Sbjct 4039 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGG 4098
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| ||| | | || | || || | | |||||| || || ||||| | |||
Sbjct 4099 ATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTATGGTTTTT 4158
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || ||||| |||||||||||||||||
Sbjct 4159 CCGGTGAGAGTCTTCACAAAGATTTGCAT 4187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423699297358656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |