Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19092 104 3e-17 seq80422 100 4e-16 seq89547 93.3 5e-14 seq2110 89.7 6e-13 seq145907 86.0 8e-12 >seq19092 Length=7288 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 4895 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 4836 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 4835 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 4776 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 4775 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 4718 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 4717 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 4658 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 4657 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 4598 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 4597 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 4538 Query 11810 CCTGGCTTACCCGCGAGAAG 11829 ||||| ||| ||||||| Sbjct 4537 CCTGGAGGACCAACGAGAAG 4518 >seq80422 Length=4294 Score = 100 bits (110), Expect = 4e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 1468 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1409 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||| | | | |||||||||| || ||| ||| Sbjct 1408 GAACCATCTTTGGGACATCATATGGTATATTTTAATAGCAGAATCAATATCATCCTTGTG 1349 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 1348 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 1290 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 1289 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1230 Query 112167 G 112167 | Sbjct 1229 G 1229 >seq89547 Length=5293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||||||||| || || | ||||||||||| | || ||||| | || Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975 Query 122790 CGCAAACGC 122798 |||||||| Sbjct 2976 AGCAAACGC 2984 >seq2110 Length=919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 389 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 330 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 329 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 270 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||| | || || |||| | | | || | || | || |||| Sbjct 269 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 212 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 211 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 162 >seq145907 Length=1675 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 45 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 102 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 103 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 162 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 163 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 222 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 223 ACAAACAACTCAACAAACTCTGAGGCAG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626159773804800