Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq19092 104 3e-17
seq80422 100 4e-16
seq89547 93.3 5e-14
seq2110 89.7 6e-13
seq145907 86.0 8e-12
>seq19092
Length=7288
Score = 104 bits (114), Expect = 3e-17
Identities = 252/380 (66%), Gaps = 4/380 (1%)
Strand=Plus/Minus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
||||||||| || || | | | ||| |||||| || ||| | | ||||| || ||
Sbjct 4895 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 4836
Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571
||| || | || ||||| | | ||||| |||||||| || || | | || ||||
Sbjct 4835 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 4776
Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629
|| || ||||| |||||||| || | | | | |||| | | ||| | || ||
Sbjct 4775 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 4718
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
|||||||| ||||| | || ||||| || || ||| || ||| | | || |||
Sbjct 4717 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 4658
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749
|| || || || ||||| ||||||||||||||||| ||||| | | | ||
Sbjct 4657 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 4598
Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809
|| ||||| ||| | |||||| || || || ||| || || ||||| || ||
Sbjct 4597 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 4538
Query 11810 CCTGGCTTACCCGCGAGAAG 11829
||||| ||| |||||||
Sbjct 4537 CCTGGAGGACCAACGAGAAG 4518
>seq80422
Length=4294
Score = 100 bits (110), Expect = 4e-16
Identities = 169/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987
|||| |||| ||| || ||||| || |||||||| || || || || | ||| || |
Sbjct 1468 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1409
Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047
|||| | |||||||||| | | |||| | | | |||||||||| || ||| |||
Sbjct 1408 GAACCATCTTTGGGACATCATATGGTATATTTTAATAGCAGAATCAATATCATCCTTGTG 1349
Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107
|| || || | |||| ||| ||||| | ||| || |||| | | | || | ||
Sbjct 1348 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 1290
Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
|| || | || ||| | ||||||||||||||| ||||||||| || | ||| | ||||
Sbjct 1289 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1230
Query 112167 G 112167
|
Sbjct 1229 G 1229
>seq89547
Length=5293
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||||||||||||||| || || | ||||||||||| | || ||||| | ||
Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
||||| || | |||| | || ||||| || ||| |||||||| || |||||||| ||
Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975
Query 122790 CGCAAACGC 122798
||||||||
Sbjct 2976 AGCAAACGC 2984
>seq2110
Length=919
Score = 89.7 bits (98), Expect = 6e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| | ||||||||| |||||||| || || || || | ||| || | ||| | |||
Sbjct 389 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 330
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| | | |||||| | | ||||||||||||| ||| ||| || || | ||
Sbjct 329 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 270
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117
|||| ||| ||||| | || || |||| | | | || | || | || ||||
Sbjct 269 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 212
Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
||| | |||| |||||||||| ||||| ||| || | ||| | |||||
Sbjct 211 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 162
>seq145907
Length=1675
Score = 86.0 bits (94), Expect = 8e-12
Identities = 145/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
|||||||||||| || || | | |||||||| || || ||||| ||||| ||| ||
Sbjct 45 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 102
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | | || || | | || | ||||| |||||||| |||||||| || ||||||
Sbjct 103 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 162
Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
|| ||| || ||| | ||||| | ||| | || || || || ||||||
Sbjct 163 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 222
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744
||||||| ||| ||||| | || |||||
Sbjct 223 ACAAACAACTCAACAAACTCTGAGGCAG 250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626159773804800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |