Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq89547 116 5e-21 seq19092 89.7 6e-13 >seq89547 Length=5293 Score = 116 bits (128), Expect = 5e-21 Identities = 372/569 (65%), Gaps = 15/569 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || || ||||| | ||||| ||||| || || ||||| | || Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG--AGCGGGACTTTGTATCAAACCACTTCATC 130204 || ||||| | | | ||| ||||| | || | | || | ||| || | | Sbjct 2976 AGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 3030 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 130264 |||||| || || || ||| || || || |||| ||| || | |||||| ||| Sbjct 3031 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 3090 Query 130265 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 ||||| | ||| ||||||||||| | |||| || || || ||||| |||| Sbjct 3091 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 3148 Query 130324 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT-C 130380 ||| ||||| ||| | ||||||| | ||||| ||| | ||| |||| | Sbjct 3149 -TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTCC 3207 Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 || || || || ||||| | || || || ||||| | ||||| || || Sbjct 3208 GTCATGAACCTT-CCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGAAGGC 3266 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 3267 GAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATC 3326 Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560 | ||| ||||| || ||||| || |||||| | || || ||||| || | ||| Sbjct 3327 TTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 3386 Query 130561 CCAGAGGTGGGGATACTTCAGGGGGAACA 130589 ||| | || ||||||| | ||||||| Sbjct 3387 CCAAATTTGTGGATACTGAATCGGGAACA 3415 >seq19092 Length=7288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 4847 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 4788 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 4787 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 4730 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCA 14290 || | || ||||| ||||||||||| | || || || || || ||| || ||| Sbjct 4729 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 4670 Query 14291 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 4669 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 4611 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | | | || | || || || || | |||||| || || || ||| || | Sbjct 4610 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 4552 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 | |||||||| || ||||| || ||||||| |||| Sbjct 4551 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 4512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616591582825280