Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 116 5e-21
seq19092 89.7 6e-13
>seq89547
Length=5293
Score = 116 bits (128), Expect = 5e-21
Identities = 372/569 (65%), Gaps = 15/569 (3%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
|||||||||||| || || ||||| | ||||| ||||| || || ||||| | ||
Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| ||
Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG--AGCGGGACTTTGTATCAAACCACTTCATC 130204
|| ||||| | | | ||| ||||| | || | | || | ||| || | |
Sbjct 2976 AGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 3030
Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 130264
|||||| || || || ||| || || || |||| ||| || | |||||| |||
Sbjct 3031 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 3090
Query 130265 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323
||||| | ||| ||||||||||| | |||| || || || ||||| ||||
Sbjct 3091 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 3148
Query 130324 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT-C 130380
||| ||||| ||| | ||||||| | ||||| ||| | ||| |||| |
Sbjct 3149 -TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTCC 3207
Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440
|| || || || ||||| | || || || ||||| | ||||| || ||
Sbjct 3208 GTCATGAACCTT-CCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGAAGGC 3266
Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500
|| | | | | | ||| | || || | || | |||| || ||||| | |||||
Sbjct 3267 GAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATC 3326
Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560
| ||| ||||| || ||||| || |||||| | || || ||||| || | |||
Sbjct 3327 TTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 3386
Query 130561 CCAGAGGTGGGGATACTTCAGGGGGAACA 130589
||| | || ||||||| | |||||||
Sbjct 3387 CCAAATTTGTGGATACTGAATCGGGAACA 3415
>seq19092
Length=7288
Score = 89.7 bits (98), Expect = 6e-13
Identities = 228/340 (67%), Gaps = 8/340 (2%)
Strand=Plus/Minus
Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172
||| || || || || |||| ||| || || | ||||| |||||||| || |||||
Sbjct 4847 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 4788
Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230
|| || || | ||| || || | |||||||||| | | | | | || | | | |
Sbjct 4787 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 4730
Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCA 14290
|| | || ||||| ||||||||||| | || || || || || ||| || |||
Sbjct 4729 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 4670
Query 14291 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349
||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| |
Sbjct 4669 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 4611
Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408
| | | | || | || || || || | |||||| || || || ||| || |
Sbjct 4610 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 4552
Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448
| |||||||| || ||||| || ||||||| ||||
Sbjct 4551 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 4512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 616591582825280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |