Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19092 138 1e-27 seq38305 98.7 1e-15 seq80422 91.5 2e-13 seq2110 86.0 7e-12 seq145907 82.4 9e-11 >seq19092 Length=7288 Score = 138 bits (152), Expect = 1e-27 Identities = 311/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 4865 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 4806 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 4805 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 4748 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 4747 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 4688 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 4687 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 4629 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 4628 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 4570 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 4569 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 4510 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 |||||| || ||| | |||||||||| | |||||| || ||||| | || Sbjct 4509 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTT 4450 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||| || | |||| || ||||||| Sbjct 4449 CCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 4410 >seq38305 Length=3123 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 1740 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 1799 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 1800 ATGGACAGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 1858 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | ||| Sbjct 1859 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGTT 1918 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || || |||||||| |||||||| ||||| ||| ||||| Sbjct 1919 CACTCATGCTACTCCAACCCTTTTCAATGCAGGTACTCCACAGCCCCA 1966 >seq80422 Length=4294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 1238 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 1297 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 1298 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 1356 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | | |||| | | |||||||||| | ||||| || || Sbjct 1357 TGATATTGATTCTGCTATTAAAATATACCATATGATGTCCCAAAGATGGTTCACCCATGC 1416 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 1417 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 1455 >seq2110 Length=919 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| |||||||||| |||| | ||| |||| || | | | | | Sbjct 171 GACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAGGTC-CAAGG 229 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 ||| | |||| || || | ||||| ||| | || || | || ||||| || Sbjct 230 AAAAGTTG-TAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGATTCACAAGG 288 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | ||||||||||||| | | |||||| | | |||||| ||| | ||| | || | Sbjct 289 ATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGTTTACCCATG 348 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || | || || || || |||||||| ||||||||| |||| Sbjct 349 CATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCA 388 >seq145907 Length=1675 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/217 (70%), Gaps = 12/217 (6%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 45 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 102 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 103 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 162 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| || || | |||| ||| | ||||| ||| || | ||||| || Sbjct 163 CACGGTGCCTT--CGATTTGGCCTTCTCAAACAAATCCCT--CACTCTGGATGCGCCAAC 218 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 219 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581522041229120