Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq235167 120 3e-22 seq89547 111 2e-19 seq589 91.5 2e-13 seq221054 82.4 8e-11 >seq235167 Length=544 Score = 120 bits (132), Expect = 3e-22 Identities = 286/421 (68%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 || || ||||||||||| || |||||||| || | ||||| | | | | || Sbjct 536 GTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTC 477 Query 59763 TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGA 59821 || || ||||| | ||||||| || | ||||||| | || ||| || ||| Sbjct 476 ATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGC-CATCGA 418 Query 59822 GTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGA 59881 | ||||||||||| | |||||||||| | | || | || | || | | || || Sbjct 417 GAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGACGA 358 Query 59882 GAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAA 59939 ||| || | | | || || ||| | || ||| | || || ||| |||| || || Sbjct 357 AAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCCGTGC-GTTGCCAAAAAGGCCGAT 300 Query 59940 TGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997 |||||| | | ||||| || || |||| |||| || | | || ||||| |||| Sbjct 299 TGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATTCGCGGAGAGACTGATAGCGTTTG 242 Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057 | ||||||||||| || |||||||| ||| ||||| || || || ||| | ||||||| Sbjct 241 CCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGC 182 Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117 | || | ||||||||||| | ||||| |||||||| || || || || || || |||| Sbjct 181 GCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCC 122 Query 60118 A 60118 | Sbjct 121 A 121 >seq89547 Length=5293 Score = 111 bits (122), Expect = 2e-19 Identities = 243/355 (68%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 ||| |||||| | |||||||| || | ||||||| | ||| ||| || |||| | Sbjct 3207 GGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACA 3149 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 |||||||||| | ||||||||| | | || | | |||| || | || || ||| Sbjct 3148 TCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA 3089 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 |||| || | ||||| |||||| | ||| || || | | ||||| ||||| Sbjct 3088 ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGC-GTCGCAAAGAAAGCCACGTGGGCG 3030 Query 59946 ATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 | | ||||| || || |||| | ||||| | | | || || ||||| |||| Sbjct 3029 TTAAATTGGATCGACGGCTCGGAGACT--TTTGCGGAGAGATTAATCGCGTTTGCTTGCG 2972 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 |||| || || |||||||| || || || || || || |||||||||||||| || Sbjct 2971 TGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAAAGCGCGGGT 2912 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | |||||||| ||| ||||| || ||| |||| || || || ||||| ||||| Sbjct 2911 TAATGCCGGGATTGACGTTCTCAAATGAGTTGATCTCGCGAGATGAGGGTCTCCA 2857 >seq589 Length=4664 Score = 91.5 bits (100), Expect = 2e-13 Identities = 292/446 (65%), Gaps = 24/446 (5%) Strand=Plus/Minus Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 || ||||| ||||| ||||||||||| || |||||||| ||| ||||| | || || Sbjct 4508 CTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCAGGCAGTTTCTGCGTGATATTT 4449 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 | | | |||||||| || | ||| ||||||| | ||||| ||| |||| || || || Sbjct 4448 TAGTTGAAAAAGCGCGGGTTAATGTCGGGCCTAACCTTCTCGAACAAGCTAATCTCGCGA 4389 Query 60105 GACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACA-CCTATT--GGAA-AA 60160 || || || ||||| || || || || ||| | ||| | || | |||| || Sbjct 4388 GATGAAGGACTCCACTGTGATTTCGC-GT---GCTTGTTGTACAGCTTACTGAGGAACAA 4333 Query 60161 ATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGA 60217 || |||||| | | ||| || || ||| || | ||||| || Sbjct 4332 AT---TAAGCAAGGAGCGCGTAAAGGGGATAGTGAAGGAGGCAGTGGATATAGAGAGGGA 4276 Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277 |||| | || ||||| || ||| | | | || ||| ||| | |||| || Sbjct 4275 GTTCGTGTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGGGCGTTGATGAGTCA 4216 Query 60278 GTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAAGGACCAATT 60332 |||||| ||||||| || || | | || || | | | | ||||| | Sbjct 4215 GTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGCGCTCGGGTGCGGGAAGG-----TG 4161 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 |||||||||| || || || || ||||||||| || ||| || |||||||||| || Sbjct 4160 TACGGCGTGACGAATCCATTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAAT 4101 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||| | |||||||| || Sbjct 4100 TTCTTTGAGAAGAGAGTCGGGGAATA 4075 >seq221054 Length=1188 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 || ||||| ||||| ||||||||||| || || ||||| ||| ||||| || || || Sbjct 149 CTGATAGCATTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTT 208 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 || | |||||| | || | | |||||| || | ||||| |||||||| || || || Sbjct 209 TGCTTAAAAAAGAGCGGGTTAACGCCGGGGCTAACCTTCTCAAACGAGCTAATCTCGCGA 268 Query 60105 GACGA 60109 ||||| Sbjct 269 GACGA 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546889592718720