Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq235167 120 3e-22
seq89547 111 2e-19
seq589 91.5 2e-13
seq221054 82.4 8e-11
>seq235167
Length=544
Score = 120 bits (132), Expect = 3e-22
Identities = 286/421 (68%), Gaps = 10/421 (2%)
Strand=Plus/Minus
Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762
|| || ||||||||||| || |||||||| || | ||||| | | | | ||
Sbjct 536 GTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTC 477
Query 59763 TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGA 59821
|| || ||||| | ||||||| || | ||||||| | || ||| || |||
Sbjct 476 ATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGC-CATCGA 418
Query 59822 GTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGA 59881
| ||||||||||| | |||||||||| | | || | || | || | | || ||
Sbjct 417 GAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGACGA 358
Query 59882 GAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAA 59939
||| || | | | || || ||| | || ||| | || || ||| |||| || ||
Sbjct 357 AAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCCGTGC-GTTGCCAAAAAGGCCGAT 300
Query 59940 TGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997
|||||| | | ||||| || || |||| |||| || | | || ||||| ||||
Sbjct 299 TGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATTCGCGGAGAGACTGATAGCGTTTG 242
Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057
| ||||||||||| || |||||||| ||| ||||| || || || ||| | |||||||
Sbjct 241 CCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGC 182
Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117
| || | ||||||||||| | ||||| |||||||| || || || || || || ||||
Sbjct 181 GCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCC 122
Query 60118 A 60118
|
Sbjct 121 A 121
>seq89547
Length=5293
Score = 111 bits (122), Expect = 2e-19
Identities = 243/355 (68%), Gaps = 8/355 (2%)
Strand=Plus/Minus
Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826
||| |||||| | |||||||| || | ||||||| | ||| ||| || |||| |
Sbjct 3207 GGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACA 3149
Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886
|||||||||| | ||||||||| | | || | | |||| || | || || |||
Sbjct 3148 TCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA 3089
Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945
|||| || | ||||| |||||| | ||| || || | | ||||| |||||
Sbjct 3088 ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGC-GTCGCAAAGAAAGCCACGTGGGCG 3030
Query 59946 ATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003
| | ||||| || || |||| | ||||| | | | || || ||||| ||||
Sbjct 3029 TTAAATTGGATCGACGGCTCGGAGACT--TTTGCGGAGAGATTAATCGCGTTTGCTTGCG 2972
Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063
|||| || || |||||||| || || || || || || |||||||||||||| ||
Sbjct 2971 TGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAAAGCGCGGGT 2912
Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
| |||||||| ||| ||||| || ||| |||| || || || ||||| |||||
Sbjct 2911 TAATGCCGGGATTGACGTTCTCAAATGAGTTGATCTCGCGAGATGAGGGTCTCCA 2857
>seq589
Length=4664
Score = 91.5 bits (100), Expect = 2e-13
Identities = 292/446 (65%), Gaps = 24/446 (5%)
Strand=Plus/Minus
Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044
|| ||||| ||||| ||||||||||| || |||||||| ||| ||||| | || ||
Sbjct 4508 CTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCAGGCAGTTTCTGCGTGATATTT 4449
Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104
| | | |||||||| || | ||| ||||||| | ||||| ||| |||| || || ||
Sbjct 4448 TAGTTGAAAAAGCGCGGGTTAATGTCGGGCCTAACCTTCTCGAACAAGCTAATCTCGCGA 4389
Query 60105 GACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACA-CCTATT--GGAA-AA 60160
|| || || ||||| || || || || ||| | ||| | || | |||| ||
Sbjct 4388 GATGAAGGACTCCACTGTGATTTCGC-GT---GCTTGTTGTACAGCTTACTGAGGAACAA 4333
Query 60161 ATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGA 60217
|| |||||| | | ||| || || ||| || | ||||| ||
Sbjct 4332 AT---TAAGCAAGGAGCGCGTAAAGGGGATAGTGAAGGAGGCAGTGGATATAGAGAGGGA 4276
Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277
|||| | || ||||| || ||| | | | || ||| ||| | |||| ||
Sbjct 4275 GTTCGTGTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGGGCGTTGATGAGTCA 4216
Query 60278 GTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAAGGACCAATT 60332
|||||| ||||||| || || | | || || | | | | ||||| |
Sbjct 4215 GTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGCGCTCGGGTGCGGGAAGG-----TG 4161
Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392
|||||||||| || || || || ||||||||| || ||| || |||||||||| ||
Sbjct 4160 TACGGCGTGACGAATCCATTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAAT 4101
Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||||||||| | |||||||| ||
Sbjct 4100 TTCTTTGAGAAGAGAGTCGGGGAATA 4075
>seq221054
Length=1188
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044
|| ||||| ||||| ||||||||||| || || ||||| ||| ||||| || || ||
Sbjct 149 CTGATAGCATTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTT 208
Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104
|| | |||||| | || | | |||||| || | ||||| |||||||| || || ||
Sbjct 209 TGCTTAAAAAAGAGCGGGTTAACGCCGGGGCTAACCTTCTCAAACGAGCTAATCTCGCGA 268
Query 60105 GACGA 60109
|||||
Sbjct 269 GACGA 273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546889592718720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |