Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq195423 572 2e-158 seq163170 159 4e-34 seq47149 89.7 6e-13 >seq195423 Length=63734 Score = 572 bits (634), Expect = 2e-158 Identities = 701/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 1583 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 1525 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| ||||||||||| ||||| || Sbjct 1524 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 1465 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 1464 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 1405 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 1404 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1345 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 1344 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1285 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 1284 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 1225 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | ||||||| || |||||| | |||| ||| ||||||||||| | Sbjct 1224 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 1165 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| ||||| || ||| |||||||||| Sbjct 1164 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAG 1105 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || || Sbjct 1104 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 1045 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 1044 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 985 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || ||||||| |||||| ||||| ||||| || || || Sbjct 984 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 925 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| |||||||| ||||| || | |||||||| |||||| |||||| || Sbjct 924 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 865 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 864 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 805 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 804 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 745 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||| ||||| ||||||||| Sbjct 744 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 685 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 684 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631 >seq163170 Length=29127 Score = 159 bits (176), Expect = 4e-34 Identities = 205/281 (73%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 9773 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 9714 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 9713 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 9654 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAGA 19472 |||| || || || |||||| || | |||||| | |||||| | | Sbjct 9653 AGATCTGCCTGTTGTTGATTGGAAATTGGA--AACAGATATTCGAAAGAAACGATTGCTT 9596 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| |||||||| || ||||||||||| |||||||| ||| Sbjct 9595 AATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTCCA 9536 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||| ||| |||| ||||| |||||||||||| | || || Sbjct 9535 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 9495 >seq47149 Length=727 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 19368 TTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTG 19427 ||||| || ||||| || ||||| || || | |||||| |||||| |||||| || Sbjct 2 TTTGATAAATGTATTGCTTGTGAAGTATGCGCTCGAGTATACCCTATAGATCTACATGTT 61 Query 19428 GTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGAT 19483 || | |||| ||| || | | | |||| ||||| | | |||||| || Sbjct 62 GTTGGTTGGAAATTTGA--AATAGATATTCAAA--AGAAATGATTGCTAAATTACAATAT 117 Query 19484 AGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCT 19543 || |||||| | |||||| | ||||| ||| | |||||||| |||||||| ||| | Sbjct 118 TGATTTTGGAATTTATATTTTTGGTGGTAATTGCATTGAGTATTGTCCAACAAATTGTTT 177 Query 19544 ATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||| ||||| ||||||||||| | |||| Sbjct 178 ATCAATGACTAAAGAATATGAACTTCCTAC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601695322844160