Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 572 2e-158
seq163170 159 4e-34
seq47149 89.7 6e-13
>seq195423
Length=63734
Score = 572 bits (634), Expect = 2e-158
Identities = 701/954 (73%), Gaps = 2/954 (0%)
Strand=Plus/Minus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||||||||||||||| | ||||| || | | | || || | | |||
Sbjct 1583 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 1525
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || || ||||| || || || || ||||| ||||||||||| ||||| ||
Sbjct 1524 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 1465
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
| ||||||||||| ||||||||||| || || || || || | | || | ||
Sbjct 1464 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 1405
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | || || ||||| || |||||||| ||| | ||||| |||||| | |||
Sbjct 1404 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1345
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
||||| || || || | || |||| | |||||| | | ||| | | |||||||
Sbjct 1344 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1285
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| || | ||||||||||||| | | || || |||||||||||||| |||||||||
Sbjct 1284 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 1225
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565
|| || || || | ||||||| || |||||| | |||| ||| ||||||||||| |
Sbjct 1224 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 1165
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||||||||||||||||| || || || ||||| ||||| || ||| ||||||||||
Sbjct 1164 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAG 1105
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || ||
Sbjct 1104 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 1045
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| || || ||| || ||||| || | || || ||| | | || || ||
Sbjct 1044 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 985
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || ||||||| |||||| ||||| ||||| || || ||
Sbjct 984 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 925
Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865
|| |||||||| |||||||| ||||| || | |||||||| |||||| |||||| ||
Sbjct 924 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 865
Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925
|| | | | || |||||||| || || | || || || | |||||||| |||||
Sbjct 864 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 805
Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985
| ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| |
Sbjct 804 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 745
Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045
|| | ||| || ||| ||| |||| ||||| |||| ||||| |||||||||
Sbjct 744 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 685
Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099
|||||||||||||| || ||||||||||| |||||||| || ||||| ||||||
Sbjct 684 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631
>seq163170
Length=29127
Score = 159 bits (176), Expect = 4e-34
Identities = 205/281 (73%), Gaps = 4/281 (1%)
Strand=Plus/Minus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| || ||| | || || |||||| | | ||||||||
Sbjct 9773 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 9714
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| || | ||| ||||| || ||||| || ||||| || || || | ||||| |||||
Sbjct 9713 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 9654
Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAGA 19472
|||| || || || |||||| || | |||||| | |||||| | |
Sbjct 9653 AGATCTGCCTGTTGTTGATTGGAAATTGGA--AACAGATATTCGAAAGAAACGATTGCTT 9596
Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532
||||| || || |||||| |||||||| || ||||||||||| |||||||| |||
Sbjct 9595 AATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTCCA 9536
Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573
||||| ||| |||| ||||| |||||||||||| | || ||
Sbjct 9535 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 9495
>seq47149
Length=727
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/210 (70%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 19368 TTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTG 19427
||||| || ||||| || ||||| || || | |||||| |||||| |||||| ||
Sbjct 2 TTTGATAAATGTATTGCTTGTGAAGTATGCGCTCGAGTATACCCTATAGATCTACATGTT 61
Query 19428 GTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGAT 19483
|| | |||| ||| || | | | |||| ||||| | | |||||| ||
Sbjct 62 GTTGGTTGGAAATTTGA--AATAGATATTCAAA--AGAAATGATTGCTAAATTACAATAT 117
Query 19484 AGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCT 19543
|| |||||| | |||||| | ||||| ||| | |||||||| |||||||| ||| |
Sbjct 118 TGATTTTGGAATTTATATTTTTGGTGGTAATTGCATTGAGTATTGTCCAACAAATTGTTT 177
Query 19544 ATCCATGACAGAAGAATATGAATTGGCTAC 19573
||| ||||| ||||||||||| | ||||
Sbjct 178 ATCAATGACTAAAGAATATGAACTTCCTAC 207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 601695322844160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |