Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq68514 95.1 9e-15 seq13742 86.0 4e-12 seq68470 84.2 2e-11 seq43799 82.4 5e-11 >seq68514 Length=8688 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 7986 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 8045 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 8046 TCCGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 8100 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || |||||||| || ||| | || |||| |||| ||| ||| Sbjct 8101 CGGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 8160 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 8161 ATTACAACATTCAAAAAGAATCCACTTTGCAT 8192 >seq13742 Length=406 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | || || || || || | || || || ||| | Sbjct 366 ATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTTC 307 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| ||||| |||| ||| | Sbjct 306 GACACGATCGACAAT--GTCAAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACC 249 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || |||||||| || | || |||| |||| |||| | ||||||| Sbjct 248 AGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACA 189 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || | || | ||| | || |||||| Sbjct 188 ACATCCAGAAGGAGTCGACTCTCCACCTTGTCCTCCGTCTCCGCGGCGGC 139 >seq68470 Length=2690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || ||| |||||| | || ||||| ||| || Sbjct 207 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 266 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| || || |||| ||| | Sbjct 267 GACACCATCGACAAC--GTCAAGGCGAAGATTCAAGACAAGGAGGGAATTCCCCCGGACC 324 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || |||||||| | || |||| |||| |||| ||||||||| Sbjct 325 AGCAGAGGCTTATCTTCGCTGGAAAACAGCTCGAGGACGGCCGCACCTTGGCCGATTACA 384 Query 27968 ACATCCAAAAAGAG 27981 |||| || || ||| Sbjct 385 ACATACAGAAGGAG 398 >seq43799 Length=2218 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| ||| ||||| |||| || ||||| | Sbjct 305 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 246 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || ||| |||||| ||||| || ||| | || || | Sbjct 245 GACACCATCGACAAT--GTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATC 188 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 |||| || | |||||||| ||||| || | || || ||| | |||| | || || Sbjct 187 AGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTG-CAGACTAT 129 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| |||| | || |||||| | || | ||||| || Sbjct 128 AACATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGG 79 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 533 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 474 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 473 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 416 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 415 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 357 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | |||||||| | ||| | ||||| || Sbjct 356 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGG 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354828060134376