Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq71848 98.7 9e-16 seq68514 91.5 1e-13 seq43778 89.7 4e-13 >seq71848 Length=4061 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| ||||| | || |||||| || || || || ||||||||||| Sbjct 3802 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 3861 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 3862 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3921 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| ||| || | ||| | | | ||| ||| |||||| Sbjct 3922 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCAC 3980 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 3981 CTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028 >seq68514 Length=8688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || ||| || || || || ||||| ||||| || | | | Sbjct 8431 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCA 8372 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || |||||||| || |||||| | || || || Sbjct 8371 TCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCT-TCCTT 8313 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 |||| |||||| |||| | | | || || |||| || || |||| || Sbjct 8312 GTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGAGT 8256 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||||||||| ||||| || ||||| ||||| Sbjct 8255 GATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || |||||||| | || || |||| || || || || || ||||| Sbjct 8179 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 8120 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| || |||| ||| Sbjct 8119 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 8061 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||| || | ||||| | || || || || ||||| || Sbjct 8060 GTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCAC 8001 Query 39273 AAAGATTTGCATCTTTAC 39290 ||| || |||||||| || Sbjct 8000 AAATATCTGCATCTTCAC 7983 >seq43778 Length=4696 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| || || || | || ||| Sbjct 3979 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTCA 4038 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || ||||| | || || |||||| Sbjct 4039 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCT-TCCTTGTCCTG 4097 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || ||||| | | | ||||| ||| || || || | || || | Sbjct 4098 GATCTTAGCTTTGACATTATCAATGGTATCAGAGCT---TTCAACCTCAAGGGTTATGGT 4154 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||| || || || || |||||||||||||||| Sbjct 4155 TTTTCCGGTGAGAGTCTTCACAAAGATTTGCATCT 4189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428297094571544