Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq89547 199 3e-46 seq590 127 2e-24 seq235167 111 1e-19 >seq89547 Length=5293 Score = 199 bits (220), Expect = 3e-46 Identities = 422/625 (68%), Gaps = 5/625 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598 |||| | ||||| ||||| || || | ||| || |||| || | |||| || || || Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTC-GCGAGATCAACTCATTTGAG 2892 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 ||||| ||||| |||||||| || | |||||| ||||||||||| ||| ||| ||| Sbjct 2893 AACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 2952 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| || || || ||| |||||||| | ||||| | | || | || | Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGT-CT--CC 3009 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 | | | ||||| ||||| ||||| | ||||| || ||||| |||| || | Sbjct 3010 GAGCCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 3069 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || |||| ||| | | ||||| | ||||| || ||||| |||| || || Sbjct 3070 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 3129 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 |||||||| || || || || || || || ||||| || ||||| ||| | || Sbjct 3130 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCC 3189 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || | || || || || | || ||| | | | ||| ||| || || ||||| Sbjct 3190 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 3249 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018 ||||||||| || || | || || | | |||| || ||||||| | || Sbjct 3250 GAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 3309 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||||||| | | ||||| | | ||||||||| ||| | ||||||||||||||||| Sbjct 3310 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 3369 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 ||||| |||||||| |||||| | |||||||||||||| | ||| ||||| | | Sbjct 3370 GCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCG 3429 Query 5139 TCGTTAGGTGTAAGAAGCGGTTCTT 5163 || || | |||||||| |||| Sbjct 3430 GGATTTGGGGCTAGAAGCGGCTCTT 3454 >seq590 Length=6039 Score = 127 bits (140), Expect = 2e-24 Identities = 412/630 (65%), Gaps = 15/630 (2%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598 |||| || ||||| |||| ||||| | ||||| |||| || | || || ||||| || Sbjct 1311 ACAACAAGCACGCGAAATGGCAATGGAGTCCTTCATCTC-GCAAGATTAGCTCGTTTGAG 1369 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACC 4656 || ||| || |||||||| | | |||||| | ||| ||||| ||| | || || || Sbjct 1370 AAGATTAGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCC 1429 Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG 4716 |||||| |||| ||||| ||| ||||||||||| || || | |||| | | Sbjct 1430 GAGAAAA--ATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATG---TCT 1484 Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGT-TAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | | | || ||||| ||| | ||||| | | || |||| |||||||| | || Sbjct 1485 CCGAGCCGTTGATCCAATTTCAGGCCCAATCTGGC--TTTTGGAAACGCACGACACCGTT 1542 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTC--AAATGGGTCTTGAATATAAGTGTCTATTA 4833 | || |||| |||||| || ||||| || | | || || ||||| | || | Sbjct 1543 TCAATGGCGTGAAATAAGCGGCTCTTTTCGTCAAAGTTTTTTTTATGTAAGTTTTTAGAA 1602 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC 4893 | || |||||||| | || || || || || || || || || ||||| ||| || Sbjct 1603 GGAGCGAGTACATTTCGAAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCTC 1662 Query 4894 TAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATAC 4953 || || ||||| ||||| || || | || | | ||||||| || || | Sbjct 1663 GCGCCTCGAAGACTTGGACTTCTTTCATGAACATGGCTGCGAGGTTTTCGAGGACAATTC 1722 Query 4954 CGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA 5013 ||| ||| || || || || | |||| | || |||| | ||||||| | | Sbjct 1723 TGTCCAAGGCGGCGAAGAAGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTA 1782 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 | || ||| ||| | | || | | | || || || || | |||||||| || | Sbjct 1783 GGGATTCCCATTGGCG-ATGTCCTGCGATGGGTCGACCTCCTCTGCCGTCCAAAATGAAG 1841 Query 5074 CTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||| ||||| |||||||| ||| || || || ||||| || |||| ||| |||| Sbjct 1842 CTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATC 1901 Query 5134 TGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 || ||| || || || ||||| |||| Sbjct 1902 GGTCTGGGTTTGGGGTTAGCAGCGGCTCTT 1931 >seq235167 Length=544 Score = 111 bits (122), Expect = 1e-19 Identities = 257/382 (67%), Gaps = 9/382 (2%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598 |||| || ||||| ||||| || || | ||||| |||| || | || || ||||| || Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTC-GCGAGATTAGCTCGTTCGAG 156 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACC 4656 || |||| || |||||||| || | |||||| | ||||||||| ||| | || || || Sbjct 157 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 216 Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG 4716 |||| |||||| ||||| ||| ||||||||||| | || | |||| | | Sbjct 217 GAGAA--GAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATG---TCT 271 Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 | | | | ||||| |||| ||||| | || ||||| ||||||||| | || | Sbjct 272 CCGAGCCGTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTT 331 Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 | ||| |||||| || ||||| | || || || || || |||| || | Sbjct 332 CAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGA 391 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | |||||||| || || || || || || || || || || ||||| ||| | | Sbjct 392 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 451 Query 4897 CTTCTGTTACTTGAACTTCGTT 4918 | || | ||||| ||||| || Sbjct 452 CCTCGGAGACTTGGACTTCTTT 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425808349376504