Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 199 3e-46
seq590 127 2e-24
seq235167 111 1e-19
>seq89547
Length=5293
Score = 199 bits (220), Expect = 3e-46
Identities = 422/625 (68%), Gaps = 5/625 (1%)
Strand=Plus/Plus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598
|||| | ||||| ||||| || || | ||| || |||| || | |||| || || ||
Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTC-GCGAGATCAACTCATTTGAG 2892
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
||||| ||||| |||||||| || | |||||| ||||||||||| ||| ||| |||
Sbjct 2893 AACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 2952
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|| ||||| || || || ||| |||||||| | ||||| | | || | || |
Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGT-CT--CC 3009
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778
| | | ||||| ||||| ||||| | ||||| || ||||| |||| || |
Sbjct 3010 GAGCCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 3069
Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838
|| |||| ||| | | ||||| | ||||| || ||||| |||| || ||
Sbjct 3070 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 3129
Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898
|||||||| || || || || || || || ||||| || ||||| ||| | ||
Sbjct 3130 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCC 3189
Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958
|| | || || || || | || ||| | | | ||| ||| || || |||||
Sbjct 3190 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 3249
Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018
||||||||| || || | || || | | |||| || ||||||| | ||
Sbjct 3250 GAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 3309
Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078
| ||||||| | | ||||| | | ||||||||| ||| | |||||||||||||||||
Sbjct 3310 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 3369
Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138
||||| |||||||| |||||| | |||||||||||||| | ||| ||||| | |
Sbjct 3370 GCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCG 3429
Query 5139 TCGTTAGGTGTAAGAAGCGGTTCTT 5163
|| || | |||||||| ||||
Sbjct 3430 GGATTTGGGGCTAGAAGCGGCTCTT 3454
>seq590
Length=6039
Score = 127 bits (140), Expect = 2e-24
Identities = 412/630 (65%), Gaps = 15/630 (2%)
Strand=Plus/Plus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598
|||| || ||||| |||| ||||| | ||||| |||| || | || || ||||| ||
Sbjct 1311 ACAACAAGCACGCGAAATGGCAATGGAGTCCTTCATCTC-GCAAGATTAGCTCGTTTGAG 1369
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACC 4656
|| ||| || |||||||| | | |||||| | ||| ||||| ||| | || || ||
Sbjct 1370 AAGATTAGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCC 1429
Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG 4716
|||||| |||| ||||| ||| ||||||||||| || || | |||| | |
Sbjct 1430 GAGAAAA--ATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATG---TCT 1484
Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGT-TAGCTTTTTTCTTAACGCACGGAATTGTG 4775
| | | || ||||| ||| | ||||| | | || |||| |||||||| | ||
Sbjct 1485 CCGAGCCGTTGATCCAATTTCAGGCCCAATCTGGC--TTTTGGAAACGCACGACACCGTT 1542
Query 4776 TATATAGCGTTAAATAATTTACTTTTTTC--AAATGGGTCTTGAATATAAGTGTCTATTA 4833
| || |||| |||||| || ||||| || | | || || ||||| | || |
Sbjct 1543 TCAATGGCGTGAAATAAGCGGCTCTTTTCGTCAAAGTTTTTTTTATGTAAGTTTTTAGAA 1602
Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC 4893
| || |||||||| | || || || || || || || || || ||||| ||| ||
Sbjct 1603 GGAGCGAGTACATTTCGAAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCTC 1662
Query 4894 TAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATAC 4953
|| || ||||| ||||| || || | || | | ||||||| || || |
Sbjct 1663 GCGCCTCGAAGACTTGGACTTCTTTCATGAACATGGCTGCGAGGTTTTCGAGGACAATTC 1722
Query 4954 CGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA 5013
||| ||| || || || || | |||| | || |||| | ||||||| | |
Sbjct 1723 TGTCCAAGGCGGCGAAGAAGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTA 1782
Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073
| || ||| ||| | | || | | | || || || || | |||||||| || |
Sbjct 1783 GGGATTCCCATTGGCG-ATGTCCTGCGATGGGTCGACCTCCTCTGCCGTCCAAAATGAAG 1841
Query 5074 CTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133
|||| ||||| |||||||| ||| || || || ||||| || |||| ||| ||||
Sbjct 1842 CTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATC 1901
Query 5134 TGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163
|| ||| || || || ||||| ||||
Sbjct 1902 GGTCTGGGTTTGGGGTTAGCAGCGGCTCTT 1931
>seq235167
Length=544
Score = 111 bits (122), Expect = 1e-19
Identities = 257/382 (67%), Gaps = 9/382 (2%)
Strand=Plus/Plus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598
|||| || ||||| ||||| || || | ||||| |||| || | || || ||||| ||
Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTC-GCGAGATTAGCTCGTTCGAG 156
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACC 4656
|| |||| || |||||||| || | |||||| | ||||||||| ||| | || || ||
Sbjct 157 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 216
Query 4657 CAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG 4716
|||| |||||| ||||| ||| ||||||||||| | || | |||| | |
Sbjct 217 GAGAA--GAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATG---TCT 271
Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776
| | | | ||||| |||| ||||| | || ||||| ||||||||| | || |
Sbjct 272 CCGAGCCGTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTT 331
Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836
| ||| |||||| || ||||| | || || || || || |||| || |
Sbjct 332 CAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGA 391
Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896
| |||||||| || || || || || || || || || || ||||| ||| | |
Sbjct 392 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 451
Query 4897 CTTCTGTTACTTGAACTTCGTT 4918
| || | ||||| ||||| ||
Sbjct 452 CCTCGGAGACTTGGACTTCTTT 473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425808349376504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |