Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq89547 140 4e-28 seq2110 114 2e-20 seq80422 105 9e-18 seq235167 104 3e-17 seq38305 91.5 2e-13 >seq89547 Length=5293 Score = 140 bits (154), Expect = 4e-28 Identities = 392/597 (66%), Gaps = 6/597 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || ||||| ||||||| || || || || || || || | Sbjct 2842 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAAT 2901 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||||| || || ||||||||||||||||| | ||| ||| | || || ||||| Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGAA 2960 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC--GTTGTGT 48317 || || || ||| ||||| ||| | | |||||||| || | || | | || Sbjct 2961 AATCCCCTCCACGCAAGCAAACGCGATTA--ATCTCTCCGCAAAAGTCTCCGAGCCGTCG 3018 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | ||||| || ||||| || || || | || || || || | | Sbjct 3019 ATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGA 3078 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| ||| ||||| | | ||||| | |||||| |||| | || |||||| Sbjct 3079 AAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATT 3138 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || || ||||| || ||||| || | ||| || | || | Sbjct 3139 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACC 3198 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||||| || | | | || | ||||| || || || || || ||| Sbjct 3199 TGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCA 3258 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | || || | | || | || |||| | || || | ||||| Sbjct 3259 AAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG 3318 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 || ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || Sbjct 3319 CGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTG 3378 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||||| | ||| || | || || || ||||| || ||||| || |||||| Sbjct 3379 TACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCGGGATTT 3435 >seq2110 Length=919 Score = 114 bits (126), Expect = 2e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| || ||| | | || | Sbjct 376 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 317 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 316 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 258 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| || |||||||| | | ||| | || | ||||| | ||| || | |||| Sbjct 257 CATATGTTGGGGTCTTTCTA-CAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 199 Query 78577 AAGTTTTAAAACCAAAATA 78595 ||||| || |||||||| Sbjct 198 GGGTTTTGAAGCCAAAATA 180 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 741 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 682 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||||||||| |||| ||||| || || || Sbjct 681 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 622 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 621 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 562 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 561 CCTTCAATACTATCATCTTTCATG 538 >seq80422 Length=4294 Score = 105 bits (116), Expect = 9e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||||||||| || |||||| ||| || | | || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||| ||| |||||| || || || || | ||| |||||||| | | || | ||||| Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||||||||||||||| || Sbjct 1325 ACATATGCTGAGGTCTTTCTAC 1304 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 1774 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 1715 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| || ||||||||| ||||||||||||| |||| ||||| || || || Sbjct 1714 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 1655 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| || || ||||| Sbjct 1654 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 1595 Query 78338 ACCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 1594 TCCTTCGATACTATCATCTTTCAT 1571 >seq235167 Length=544 Score = 104 bits (114), Expect = 3e-17 Identities = 230/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || || |||||||||| |||| ||||| || || || Sbjct 103 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 162 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| | ||||||||| || |||| || || ||| Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 222 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| ||| ||||| || | |||||||| || | || || || || Sbjct 223 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAA--TGTCTCCGAGCCGT 280 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | | |||||||| ||||| || || || |||| ||||| | || Sbjct 281 CGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGC 340 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | | | ||||| | | | ||| | ||| || |||| | || |||| Sbjct 341 GAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACA 400 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 |||||||||| || || || || || || || || ||||| || Sbjct 401 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAA 443 >seq38305 Length=3123 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||| || | ||| | | ||||||||| |||||| |||| |||| || Sbjct 2960 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 2901 Query 77957 AGG-GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 || |||| || | ||||| | ||| ||||| | ||||| || | |||| || ||||| Sbjct 2900 AGAAGCAT-CACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAA 2842 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||| ||||| || Sbjct 2841 AGAGATCAGGAACCCAGAGAGCATAAAAGAGATCACG 2805 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||||| || |||| |||| | ||| | ||| || | ||| || Sbjct 2308 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 2249 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || | ||||||||||||| || ||||| || || || |||||| |||||| Sbjct 2248 TTGGAAGATCCATTTGTTCCATGGATGTAACTACCTGAGGCACGGATATTATGAATGGAG 2189 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| || || Sbjct 2188 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTCCTTCAGGGTATCATATATG 2129 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || |||||||| ||||| | |||||| |||||| Sbjct 2128 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692597922840320