Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq80422 134 2e-26 seq2110 129 8e-25 seq38305 107 3e-18 seq2111 91.5 2e-13 >seq80422 Length=4294 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 1774 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 1715 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 1714 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 1655 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 1654 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 1595 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 1594 TCCTTCGATACTATCATCTTTCAT 1571 Score = 116 bits (128), Expect = 5e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 |||| ||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 1325 ACATATGCTGAGGTCTTTCTACA 1303 >seq2110 Length=919 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 741 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 682 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||||||||| ||||||||| || || || Sbjct 681 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 622 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 621 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 562 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 561 CCTTCAATACTATCATCTTTCATG 538 Score = 105 bits (116), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||| ||||||||||| || |||||| || ||| | | || | Sbjct 376 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 317 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| ||||| || ||||| || | |||||| Sbjct 316 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 258 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || |||| ||||||| ||| | || | ||||| | ||| || | |||| Sbjct 257 CATATGTTGGGGTCTTTCTACA-ACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 199 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 198 GGGTTTTGAAGCCAAAATA 180 >seq38305 Length=3123 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||||| ||||||| |||| | ||| | ||| || | |||||| Sbjct 2308 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 2249 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || | |||||||||||| || ||||| || | ||||| |||||| ||| || Sbjct 2248 TTGGAAGATCCATTTGTTCCATGGATGTAACTACCTGAGGCACGGATATTATGAATGGAG 2189 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || |||||||| || ||| || | |||||| |||| || ||||| ||| Sbjct 2188 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTCCTTCAGGGTATCATATATG 2129 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || ||||| ||||| | |||||| |||||| Sbjct 2128 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 2087 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| || | ||| || | ||||||||| |||||| |||| ||||||| Sbjct 2960 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 2901 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||| | || || | ||| ||||| | ||||| || | || | || |||||| Sbjct 2900 AGAAGCATCACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAAA 2841 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| ||||| || | | || |||||| Sbjct 2840 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCACGAGCCCGACATTCTTC 2790 >seq2111 Length=3567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA- 76146 || |||| |||||| || |||||||||||||||||||| |||||||||| | ||| || Sbjct 1074 ATGAATGTATCTGCAAGACCCTGAACTCCAATACCAATGGGTCTATGTCGCAAATTTGAC 1015 Query 76147 --AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| ||| || |||||| ||||||| ||| || ||||| || |||||| Sbjct 1014 CTTCTTGCAGTTTC---AACAGGGTAGTAATTAACATCGATTATTTTGTTAAGATTT 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710809071260160