Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq195423 690 0.0 seq29277 132 6e-26 seq98625 122 1e-22 seq29272 116 5e-21 seq83019 105 8e-18 >seq195423 Length=63734 Score = 690 bits (764), Expect = 0.0 Identities = 750/990 (76%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || |||||| | |||||||| || | ||||||||||| | Sbjct 1618 CTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTT 1559 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || ||| | ||| | ||||| |||| || || | |||||| | ||||||| Sbjct 1558 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 1500 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || ||||| || || ||||| ||| |||| || || | |||||||||| Sbjct 1499 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1440 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || |||||||| || ||||| |||| || || || | || || || || | Sbjct 1439 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1380 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||| ||| | || || || |||||||| | || | | Sbjct 1379 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1320 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || ||||||||||||||||||||| | || || Sbjct 1319 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1260 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || |||||||| || || || | Sbjct 1259 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || |||| || |||||||||| |||| |||||||||||| || || | Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || || || | ||| |||| ||||| || |||||||||||||| ||||||| Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | ||||||||| | || || |||||||| ||||| || || || |||||||| ||||| | Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| || | || | | | || | |||||||| || ||| || || Sbjct 1019 GTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 961 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||||||||| ||||| || || || || || |||||||| || || ||| Sbjct 960 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 901 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| || ||||||||||||||| | || |||||||| Sbjct 900 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 841 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| |||||| | ||| ||||||||||||| || Sbjct 840 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 781 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||| | |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 780 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 721 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 |||||||| || || | || |||||| ||||| |||||||| ||||| || |||||| Sbjct 720 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 661 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||| ||||||||||| ||||| |||||| Sbjct 660 GCTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 504 bits (558), Expect = 9e-138 Identities = 718/1005 (71%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || |||||||| || | || | Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || |||||||| ||||| || | Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || || || ||| || | || || ||| | || | | || || ||| Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCCGCA 36140 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | |||||| | | |||| ||||||||||| | Sbjct 36141 GTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCA 36200 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | ||||||| ||| | || || || |||| |||||| || || ||| Sbjct 36201 CAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACAC 36260 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTC-GTAGG 186328 || || || | || |||||||||||| | || || |||||| | ||| ||| || Sbjct 36261 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG-CTCTGTTCA 36319 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | || || || ||||| || || || |||| ||| || ||||| |||||| |||||| Sbjct 36320 ATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 36379 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || ||||| |||||||| || || ||||| || || || Sbjct 36380 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 36439 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || ||||||| || || || ||||| ||||| || || || Sbjct 36440 GATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCA 36499 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | ||||||||| | || || ||||| | ||| Sbjct 36500 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTAC 36559 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||||||||| | | ||||||||| || |||||||||||| || || | | Sbjct 36560 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCC 36619 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 ||||||| ||||||||||||||||||||||| || ||| | || ||||| || ||||| Sbjct 36620 AACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTT 36679 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 36680 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 36739 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | || || || || ||||| ||||||||||| Sbjct 36740 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGA 36799 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 ||| || ||||| | | ||||| || |||||||| || ||||| ||||| || || Sbjct 36800 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAA 36859 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || || || ||| | ||||| |||||||| | ||||| || ||||| Sbjct 36860 AAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 36919 Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| || |||| ||||| || || | || | || |||||||| Sbjct 36920 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 >seq29277 Length=523 Score = 132 bits (146), Expect = 6e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 |||| ||| |||| || ||||||||||||||| |||||||| || ||| ||||| | Sbjct 322 TTGAGTGTCCTGATGACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCC 263 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 ||||| || | |||||| |||| || || |||||||||||| ||| ||| || Sbjct 262 CATATTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTG 203 Query 171100 TTGATCAATCCGATC-AATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTG 171158 |||| || || ||| || ||||| |||| |||||||| || || |||||| |||| Sbjct 202 TTGACCAGTCAGATGGAAGCTTTC-TTGAGGATGATCAAATAGATGCAGGTTATGTTCTC 144 Query 171159 ACCTGCGTCTCATATCCTACAAGTGAT 171185 || || || | ||||||||||||||| Sbjct 143 ACTTGTGTTGCTTATCCTACAAGTGAT 117 >seq98625 Length=4366 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 ||||| || || || || ||||| ||||| ||||||||| | || || |||||| || Sbjct 1740 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 1681 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 || ||||||||||| ||||| ||||||||||| | | | |||||| ||||| || || Sbjct 1680 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 1621 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCA 171170 ||| || ||||| ||||| |||| || || | |||| | ||||| ||| | ||| Sbjct 1620 GATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 1561 Query 171171 TATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGAGAACCTTTG 171220 || || || ||||| || || | || | ||||||| | ||||| Sbjct 1560 TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG 1511 >seq29272 Length=1881 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171002 TATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGC 171061 |||||||||||||||||||||||| || ||||| | || || || | ||||| || Sbjct 1553 TATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGC 1494 Query 171062 TTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTT 171121 ||| || ||||| |||||||| ||| | ||| | ||||| || || || ||| || Sbjct 1493 TTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTT 1434 Query 171122 CCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAG 171181 || ||||||||||| |||| | |||||| |||| || || | | ||||| ||||| Sbjct 1433 TCTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAG 1374 Query 171182 TGAT 171185 |||| Sbjct 1373 TGAT 1370 >seq83019 Length=2865 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 171013 CTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGTTCGACCT 171072 |||| ||||| | ||| | || | ||| || ||||| |||||||| || || || | Sbjct 668 CTGCCGAAGATACCGGAATGGAGCTACCCTACTCATGTCGGGCTGGTGCCTGCTCTACTT 609 Query 171073 GTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTTGATGATG 171132 |||||||| | || | || || ||||| ||||| ||| ||| |||||||||||| Sbjct 608 GTGCTGGGCAGATGGTTTCAGGCTCCGTTGACCAATCAGATGGATCATTCCTTGATGATA 549 Query 171133 ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTGATTGTGTAA 171192 | ||||| || |||||| | || || ||||| ||||||||||| |||||||||| Sbjct 548 AGCAGATGGAGAAAGGTTTTGTGCTTACATGCGTTGCATATCCTACATCGGATTGTGTAA 489 Query 171193 T 171193 | Sbjct 488 T 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620215945930560