Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 706 0.0
seq9524 116 4e-21
seq98625 107 2e-18
seq93305 82.4 8e-11
>seq195423
Length=63734
Score = 706 bits (782), Expect = 0.0
Identities = 753/989 (76%), Gaps = 4/989 (0%)
Strand=Plus/Minus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|||||||||||| ||||| || || || || | || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045
||||| |||| | | | | | || ||| | ||| || || ||||||||||| | |||||
Sbjct 1557 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 1500
Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105
|||| || || || || || || || ||||| || |||| || || | ||||||||||
Sbjct 1499 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1440
Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165
| || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| |
Sbjct 1439 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1380
Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225
| |||||||| ||| | || |||||| | ||||| || ||||||| | || |||
Sbjct 1379 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1320
Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285
| | |||||| | |||| | | ||||||||||||||||||||||||| || ||
Sbjct 1319 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1260
Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345
|||| |||||||||||||||||| || ||||| || |||||||| || ||||||| ||
Sbjct 1259 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200
Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405
| || ||| || |||| || |||||||||| ||| ||||||| |||||||| || |
Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140
Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465
||||||| || ||||| | |||| | || ||||||||||||||||||||||| |||||||
Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080
Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525
| ||||| ||| | |||||||| ||||| || ||||| || || |||||||| ||||| |
Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020
Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585
|||| |||| || ||| || | | || ||||| |||||||| || || |
Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960
Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645
|||||| || ||||| || |||||||| || || ||||| || ||||||||||| ||||
Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900
Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705
| || |||| |||||||| ||| |||||||| || ||||| | || |||||||| |
Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840
Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765
| || |||||||| || ||||||||||| |||||| | || ||||||| ||||| ||||
Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780
Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825
|| | || |||||||| |||||||| || | | ||| |||| |||||||| | || |
Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720
Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885
||||||| || || | || |||||| || || |||||||| ||||| || |||||||
Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660
Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914
|||| ||||||||||| ||||| ||||||
Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631
Score = 558 bits (618), Expect = 4e-154
Identities = 722/992 (73%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239
|| ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| |
Sbjct 35979 AGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTC 36038
Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299
||| | ||||||||| | || || || || || || || |||||||| || ||| |
Sbjct 36039 GCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTA 36098
Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358
|| ||||||||| | || || ||||| ||| | || || |||||||| ||||| || |
Sbjct 36099 GCCAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAA 36157
Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418
| | | |||||| | || | |||||||||||||| | ||||| || || | ||
Sbjct 36158 TAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG 36217
Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478
|||||| ||| | || || || ||||||||||| || || ||||| || || | ||| ||
Sbjct 36218 CTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAAT 36277
Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 165537
|||||||||| | || || |||||||| || || || || | | || ||||| ||||
Sbjct 36278 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATG 36336
Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597
| || || ||||||| ||| |||||||| || ||| ||| || || || ||||| || |
Sbjct 36337 CAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAG 36396
Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657
| || || |||||||| || || || || || || || || || |||||| | |
Sbjct 36397 GTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCC 36456
Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717
| || |||||||||| ||||| ||||| |||| |||||||| |||||||| || || |
Sbjct 36457 TTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCG 36516
Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777
|| | || |||| || |||| | |||||||||||| | ||| ||||| |||||||| |
Sbjct 36517 GTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTAT 36576
Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837
|||||||||||| |||||||| ||| || ||| | || || | || ||||
Sbjct 36577 TTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAA 36636
Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897
| ||||| |||||||| |||||||| || |||||||| || ||||| ||||||| ||
Sbjct 36637 CCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCA 36696
Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957
|||| |||||| | || ||||||||| | ||||| || || | || | |||| |||
Sbjct 36697 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 36756
Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017
|| |||| | | || || || || || || ||||||||||| || || || ||||| |
Sbjct 36757 CTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAA 36816
Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077
| | || || || ||||| || ||||| || ||||| || ||||| || || | || |
Sbjct 36817 TCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACG 36876
Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137
| || | ||||| ||| |||| || ||| || |||||||| ||| || | |||||||
Sbjct 36877 AGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 36936
Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169
| || || | || | || ||||| ||||||
Sbjct 36937 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 36968
>seq9524
Length=8324
Score = 116 bits (128), Expect = 4e-21
Identities = 213/313 (68%), Gaps = 18/313 (6%)
Strand=Plus/Minus
Query 164414 ACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCAT 164473
|| ||||||| |||| | || |||||||||||||||| ||| || |||| | |||||
Sbjct 895 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 836
Query 164474 ATGCT-------CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526
||| | ||| |||| |||| |||||||||||| || ||||||||
Sbjct 835 ATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCACGG 786
Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586
|| |||| || ||| || | || || ||||| |||||||| || | || | |
Sbjct 785 TTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAG 726
Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646
|||| ||||||| || || ||||| ||| | || || | ||||| | ||| |||||
Sbjct 725 ATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGG 666
Query 164647 TCGTCTGAT-TTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705
|||| |||| ||| ||| ||| ||| || | ||| | || |||||||| |
Sbjct 665 CTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAG 606
Query 164706 CAGCATGGCCTGT 164718
|| ||||||||
Sbjct 605 ATGCTTGGCCTGT 593
>seq98625
Length=4366
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 161546 GACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGT 161605
|| ||||||||||| || || |||||||||||||| || || ||| | ||| || ||
Sbjct 1740 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 1681
Query 161606 CGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 161665
|| || || ||||| ||| |||| || || || | || ||||| | || |||||
Sbjct 1680 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 1621
Query 161666 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 161725
|| |||||||| || || | ||||| || |||||| | |||||||| ||||
Sbjct 1620 GATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 1561
Query 161726 TATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772
|| || || ||||| |||||| || || | || ||||| || ||
Sbjct 1560 TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCT 1514
>seq93305
Length=279
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/127 (75%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723
||||| ||| |||| ||||| |||| |||||||| |||||||| || || || | |
Sbjct 199 TCCAATGGTCTTATAAGTGGACTTTGAACCCCTTTCATATGATGGGAGTTGCCTGTGTAT 140
Query 165724 TAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 165783
| |||| || |||| | ||| ||||||| | ||| |||| |||| ||| | |||||
Sbjct 139 TGGGCGCTGCTCTGCTATGTGCT-TTCATGGCGCTACTATAGAAAATATTTTATTTGAAG 81
Query 165784 ATGGTGA 165790
|||||||
Sbjct 80 ATGGTGA 74
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555991976468160
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