Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 675 0.0
seq98625 116 4e-21
seq9524 104 3e-17
seq83018 96.9 4e-15
seq83019 95.1 1e-14
seq29272 91.5 2e-13
seq59708 89.7 6e-13
>seq195423
Length=63734
Score = 675 bits (748), Expect = 0.0
Identities = 750/995 (75%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657
|||||||||||| |||| ||| | || || || || | |||||||| ||||| ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716
||||||||||| | | | || || ||||| || || |||| ||| | ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776
||| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836
|| ||||||||||| || ||||| ||||| ||||| ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896
|||||||| || || | ||||| ||| | |||||||| ||||||| | || || |
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956
| |||||| | | ||| | | |||||||||||||||||||||||| || |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016
|| ||||||||||| ||||| ||| ||||| || ||||| || || ||||| ||||
Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199
Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076
||| ||| | | || || |||||||||| ||| ||||| | |||||| || || ||
Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139
Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136
| ||| || ||||| | |||| |||| ||||| || |||||||||||||| ||||||||
Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079
Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196
||||||||||| ||||| |||||||| || || || || || |||||||| ||||| ||
Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019
Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255
||| |||| || || | | | | || | |||||||| || || ||| | || |
Sbjct 1018 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960
Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315
|||||| ||||||||||| ||||| || || || ||||| |||||||| ||||| || |
Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900
Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375
| || ||||||||||||| || |||||||| || ||||| | || |||||||| |
Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840
Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435
| || |||||||| || |||||||||||||||||| | ||| ||||||| ||||| ||||
Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780
Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495
|| | || |||||||| |||||||| || | | |||||||| || || | || |
Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720
Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555
||||||| || || | || |||||| |||||||||||||| ||||| || |||||||
Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660
Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590
|||| ||||||||||| ||||| |||||| ||||
Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCTATTGAA 625
Score = 551 bits (610), Expect = 6e-152
Identities = 732/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898
|||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||
Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011
Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958
|| | || || ||| ||| || | || | || |||||| |||| |||||||| ||
Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071
Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018
|| || || |||||||| || || | || ||| ||| | || || || || ||| |
Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36131
Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078
|| || || || || ||||||||| | | | | ||||| | | | |||||||||
Sbjct 36132 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36191
Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138
|| ||||| || |||||||| |||||| ||| | || || || ||| |||||||
Sbjct 36192 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36251
Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197
|| || |||||||| |||| || |||||||||||| | || || |||||| | || ||
Sbjct 36252 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36311
Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257
||| || | | || ||||| |||||||| || || |||| |||||||||||| |||||
Sbjct 36312 TCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGT 36370
Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317
||||| || || || ||||| || || ||||| |||||||||||||| |||||
Sbjct 36371 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 36430
Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377
|| || ||||| || || ||| | || || | || || || || || ||||| | ||
Sbjct 36431 TGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAA 36490
Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437
||| || || |||||||| || || ||| | |||||| || |||| |||||||||||
Sbjct 36491 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCA 36550
Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497
||| ||||| ||||| || || | |||||||| |||| |||| |||||| ||
Sbjct 36551 TGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGC 36610
Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557
|| | || || |||| || || |||||||||||||| || || ||||| || |||||
Sbjct 36611 TTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTC 36670
Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617
||| |||||||| | || || |||||| |||||| |||||||||||||||| |||||
Sbjct 36671 TCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 36730
Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677
|| || | ||| | |||| | |||| | | || || || || ||||| |
Sbjct 36731 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACG 36790
Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737
||||||||||| ||||| || || ||| | || || || |||||||| || ||||| ||
Sbjct 36791 TGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 36850
Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797
||| || || || || || || || || ||| | |||||||||||||| | |||||
Sbjct 36851 CTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 36910
Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851
|| ||||||||| || |||| ||||| || || | || | || ||||||||
Sbjct 36911 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964
>seq98625
Length=4366
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222
|| || ||||| || || ||||| ||||||||||||||||| || || ||| || |||
Sbjct 1740 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 1681
Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282
||||||||||| || |||| ||||| || || | | || || | || || ||
Sbjct 1680 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 1621
Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCA 176342
||| || ||||| ||||| | || || || || |||| | |||||||| |||||
Sbjct 1620 GATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 1561
Query 176343 TATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTT 176391
|| || || ||||| |||||| || || | || ||||| || ||||
Sbjct 1560 TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTT 1512
>seq9524
Length=8324
Score = 104 bits (114), Expect = 3e-17
Identities = 210/313 (67%), Gaps = 18/313 (6%)
Strand=Plus/Minus
Query 178084 ACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 178143
|| ||||||| |||| |||| ||||| || ||||||| ||| || |||| | ||||||
Sbjct 895 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 836
Query 178144 ATGTT-------GGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196
||||| ||| | ||||||| ||||| ||||| || ||||||||
Sbjct 835 ATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCACGG 786
Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256
|| |||| || || || | || |||||||| || || ||| || || | |
Sbjct 785 TTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAG 726
Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316
|||| || |||| ||| || || || ||| | || || ||||||||| ||| || ||
Sbjct 725 ATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGG 666
Query 178317 TCGCCTGAT-CTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375
|||| ||||| ||| || ||| ||| || | ||| | || |||||||| |
Sbjct 665 CTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAG 606
Query 178376 CAGCATGGCCTGT 178388
|| ||||||||
Sbjct 605 ATGCTTGGCCTGT 593
>seq83018
Length=2165
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222
|||||| || || || || ||||||| || || ||| | || ||| |||||| |||
Sbjct 345 GACGATGCTTACATCCTCGACTCTGCTGAAGATGCCGGAATGGAGCTCCCCTACTCATGC 286
Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282
|||||||||||||| || | ||| || || | | || ||| | || || |||
Sbjct 285 CGCGCTGGTGCCTGCTCTACTTGCGCTGGCCTGATGGTTTCAGGCTCTGTTGACCAATCA 226
Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCA 176342
||| ||| |||||||||||| ||||||| || ||||| | || || || || ||
Sbjct 225 GATGGATCATTCCTTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCA 166
Query 176343 TATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTT 176390
||||| | |||||||||||| | || | || ||| ||||||
Sbjct 165 TATCCAAAATCAGATTGTGTGATTTATACACACAAGGAATCTGAACTT 118
>seq83019
Length=2865
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 176185 CTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTT 176244
|||| || || | ||| | || || |||||| || || ||||||||||| || | ||
Sbjct 668 CTGCCGAAGATACCGGAATGGAGCTACCCTACTCATGTCGGGCTGGTGCCTGCTCTACTT 609
Query 176245 GTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGATGATG 176304
|||| || | | | || ||| | || || ||| ||| ||| ||||||||||||
Sbjct 608 GTGCTGGGCAGATGGTTTCAGGCTCCGTTGACCAATCAGATGGATCATTCCTTGATGATA 549
Query 176305 ACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGTGTGA 176364
| ||||| || |||||| | || || || ||| |||||||||| |||||||| |
Sbjct 548 AGCAGATGGAGAAAGGTTTTGTGCTTACATGCGTTGCATATCCTACATCGGATTGTGTAA 489
Query 176365 TTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396
|| | || | || ||| |||||||| |||
Sbjct 488 TTTACACACACAAGGAATCTGAACTTTACTGA 457
>seq29272
Length=1881
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 176157 TGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTAC 176216
||| |||| || || |||||| ||||||||||| ||||| || |||| || |||
Sbjct 1570 TGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC 1511
Query 176217 TCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGAT 176276
|| ||| | ||||| || || || ||| | || ||| | | || || || || ||
Sbjct 1510 TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGAC 1451
Query 176277 CAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGT 176336
|| || ||| || || |||||||| || || | | |||||| |||| ||||||
Sbjct 1450 CAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGT 1391
Query 176337 GTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389
| | | ||||| || || ||| | || |||||| | || |||||||| ||
Sbjct 1390 GCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCT 1338
>seq59708
Length=5797
Score = 89.7 bits (98), Expect = 6e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222
|||||| || || || || ||||||| || || ||| | || ||| |||||| |||
Sbjct 5791 GACGATGCTTACATCCTCGACTCTGCTGAAGATGCTGGAATGGAGCTCCCCTACTCATGC 5732
Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282
|||||||||||||| || | ||| || || | | | ||| | || || |||
Sbjct 5731 CGCGCTGGTGCCTGCTCTACTTGCGCTGGCCTGATGGTTTTAGGCTCTGTTGACCAATCA 5672
Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCA 176342
||| ||| |||||||||||| ||||||| || ||||| | || || || || ||
Sbjct 5671 GATGGATCATTCCTTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCA 5612
Query 176343 TATCCTACGAGCGATTGTGTGATT 176366
||||| | ||||||||||||
Sbjct 5611 TATCCGAAATCAGATTGTGTGATT 5588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594529548606080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |