Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq481 136 8e-27 seq664 98.7 2e-15 seq544 98.7 2e-15 seq510 98.7 2e-15 seq440 98.7 2e-15 seq420 98.7 2e-15 seq413 98.7 2e-15 seq397 98.7 2e-15 seq350 98.7 2e-15 seq228 98.7 2e-15 seq186 98.7 2e-15 seq442 95.1 3e-14 >seq481 Length=6868915 Score = 136 bits (150), Expect = 8e-27 Identities = 566/879 (64%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||||||||| || || | || ||||| |||||||||||||| | ||| Sbjct 948766 TTCTGTATGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCA 948825 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGTGAGA 229867 |||||||||| | || ||||| || | |||| |||| ||| ||||||| |||| Sbjct 948826 TCTTTCTGGACGGCGGAAGAAGTCGACCT-ATCGCAAGACGGTCG-CGACTGG---GAGA 948880 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | ||||| |||| ||| || || |||||||||||| |||| | ||| ||||| | ||| | Sbjct 948881 ATCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCCTCAG 948940 Query 229928 ATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAG 229986 | || || || |||| ||||| ||| || | ||| || ||| || | ||| Sbjct 948941 ACGGAATCGTCCTGGAGAATCTTGCTTCCAGGTTCA-TGTCCGATGTACAAGTCTCGGAG 948999 Query 229987 GCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCT 230046 || || || |||| | ||| | | ||| ||||| || || || | Sbjct 949000 GCGCGTGCTTTCTATGGATTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACAGT 949059 Query 230047 CTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATT 230106 || || |||| || || ||| | |||| | || | || || || || Sbjct 949060 CTCCTCCTCGATACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGAGCAATC 949119 Query 230107 GAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGT 230166 |||| |||||| || || || ||| ||||||| ||| ||| | || | Sbjct 949120 GAAACCATCCCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGACGGATCT 949179 Query 230167 AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGG 230226 | | || ||||| | || |||| | | || || |||||||| | || ||||| Sbjct 949180 CAGACCTTCGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGT 949239 Query 230227 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 230286 || |||||| | ||||| |||||| ||| ||| | ||||| || | | || Sbjct 949240 AGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGATTGACCTTCTCC 949299 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCA 230346 |||||||| ||| ||| || || || | || | |||| | ||| | || Sbjct 949300 AACGAGTTGATCTCTCGAGATGAAGGCTTACACTGCGATTTCGCCTGCCTTCTCTA---C 949356 Query 230347 AAGCTCC--AGAAC-AAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTT 230403 | ||||| || || ||||| | ||| || || ||| | || || || Sbjct 949357 ACGCTCCTGAGGACGAAGCTCTCGGAGGAGCGAGTGAAGTCGATCGTCTGCGACGCCGTC 949416 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGC 230462 || | ||| | |||||| | || ||||| |||| || ||| ||| | || |||||| Sbjct 949417 GAGATCGAGAGGGAGTTTGTCTGCGACGCGCTTCCGTG-CGCGTTAGTGGGGATGAACCG 949475 Query 230463 TGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA 230522 || || ||| | ||||| ||||| || || || || | |||| | || || || || Sbjct 949476 GGACCTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTCGGGTA 949535 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 || ||| || ||| ||| || |||| | |||||| | || |||||||| || Sbjct 949536 CGGGAAGGTCTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGG 949595 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 || || ||||||||||| ||| | || |||| || || Sbjct 949596 TAAAACAAACTTCTTCGAGAAGAGAGTTGGTGATTACCA 949634 >seq664 Length=12074320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2505329 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2505388 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2505389 CCCACGGTGGGC 2505400 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 934700 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 934759 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 934760 CCCACGGTGGGC 934771 >seq544 Length=10977244 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2534030 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2533971 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2533970 CCCACGGTGGGC 2533959 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2534625 GCCTGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2534566 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2534565 CCCACGGTGGGC 2534554 >seq510 Length=7398753 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2304798 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2304857 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2304858 CCCACGGTGGGC 2304869 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||| |||| Sbjct 6683289 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTGGAGC 6683230 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6683229 CCCACGGTGGGC 6683218 >seq440 Length=7283533 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2987379 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2987320 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2987319 CCCACGGTGGGC 2987308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6824785 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6824844 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6824845 CCCACGGTGGGC 6824856 >seq420 Length=6996948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 667733 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 667792 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 667793 CCCACGGTGGGC 667804 >seq413 Length=15208799 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 128230 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 128289 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 128290 CCCACGGTGGGC 128301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1414365 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1414306 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1414305 CCCACGGTGGGC 1414294 >seq397 Length=2592215 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2433547 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2433606 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2433607 CCCACGGTGGGC 2433618 >seq350 Length=9129079 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7874762 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7874821 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7874822 CCCACGGTGGGC 7874833 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 6505314 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 6505255 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6505254 CCCACGGTGGGC 6505243 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 7875411 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGCGGGTTCGAGC 7875470 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7875471 CCCACGGTGGGC 7875482 >seq228 Length=2719846 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1020360 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1020419 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1020420 CCCACGGTGGGC 1020431 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2151012 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2150953 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2150952 CCCACGGTGGGC 2150941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2178186 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2178245 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2178246 CCCACGGTGGGC 2178257 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 305092 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 305149 Query 165318 GTTGG 165322 ||||| Sbjct 305150 GTTGG 305154 >seq186 Length=9101398 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9059815 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9059756 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9059755 CCCACGGTGGGC 9059744 >seq442 Length=8882589 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||| || |||||||||| || || |||| || |||||||||||||||||| Sbjct 5138160 GCCCGTCTAGCTCGGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5138101 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5138100 CCCACGGTGGGC 5138089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814444874150